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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Sparse__align___8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seqalign/Sparse_align_.cpp Source File

58

(*m_First_id).Reset();

72

(*m_Second_id).Reset();

133  info

->RandomOrder();

134  info

->CodeVersion(22400);

135  info

->DataSpec(ncbi::EDataSpec::eASN);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

BEGIN_NAMED_BASE_CLASS_INFO("Sparse-align", CSparse_align)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define MEMBER_PTR(MemberName)

#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)

#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)

#define SET_CLASS_MODULE(ModuleName)

bool IsAllocatedInPool(void) const THROWS_NONE

Check if object is allocated in memory pool (not system heap)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

CRef< TSecond_id > m_Second_id

void ResetNumseg(void)

Reset Numseg data member.

void ResetSecond_starts(void)

Reset Second_starts data member.

vector< int > m_Second_starts

TSecond_id & SetSecond_id(void)

Assign a value to Second_id data member.

CRef< TFirst_id > m_First_id

virtual ~CSparse_align_Base(void)

void ResetSeg_scores(void)

Reset Seg_scores data member.

void ResetSecond_strands(void)

Reset Second_strands data member.

void ResetLens(void)

Reset Lens data member.

vector< CRef< CScore > > m_Seg_scores

vector< int > m_First_starts

vector< ENa_strand > m_Second_strands

TFirst_id & SetFirst_id(void)

Assign a value to First_id data member.

virtual void Reset(void)

Reset the whole object.

void ResetFirst_starts(void)

Reset First_starts data member.

void ResetFirst_id(void)

Reset First_id data member.

void ResetSecond_id(void)

Reset Second_id data member.

ENa_strand

strand of nucleic acid

const GenericPointer< typename T::ValueType > T2 value


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