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NCBI C++ ToolKit: include/objects/varrep/SimpleVariant_.hpp Source File

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( m_choice != index )

ThrowInvalidSelection(index);

DoSelect(index, pool);

Select(index, reset, 0);

m_choice == e_Na_identity;

m_choice == e_Na_sub;

m_choice == e_Prot_sub;

m_choice == e_Prot_silent;

m_choice == e_Del;

m_choice == e_Dup;

m_choice == e_Inv;

m_choice == e_Ins;

m_choice == e_Conv;

m_choice == e_Delins;

m_choice == e_Repeat;

m_choice == e_Prot_ext;

m_choice == e_Frameshift;

.NotEmpty();

Base class for all serializable objects.

static char UnassignedByte(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TType & SetType(void)

Assign a value to Type data member.

void SetDefaultFuzzy(void)

Assign default value to Fuzzy data member.

void Reset(void)

Reset the whole object.

bool IsNa_sub(void) const

Check if variant Na_sub is selected.

const TProt_sub & GetProt_sub(void) const

Get the variant data.

bool IsInv(void) const

Check if variant Inv is selected.

TDelins & SetDelins(void)

Select the variant.

const TDup & GetDup(void) const

Get the variant data.

bool IsDel(void) const

Check if variant Del is selected.

const TDelins & GetDelins(void) const

Get the variant data.

const TInv & GetInv(void) const

Get the variant data.

C_Type & operator=(const C_Type &)

bool IsRepeat(void) const

Check if variant Repeat is selected.

bool IsProt_sub(void) const

Check if variant Prot_sub is selected.

CSimpleVariant_Base & operator=(const CSimpleVariant_Base &)

TDup & SetDup(void)

Select the variant.

bool IsFrameshift(void) const

Check if variant Frameshift is selected.

void ResetType(void)

Reset Type data member.

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

void ResetSelection(void)

Reset the selection (set it to e_not_set).

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

CSimpleVariant_Base(const CSimpleVariant_Base &)

bool IsProt_ext(void) const

Check if variant Prot_ext is selected.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

bool CanGetType(void) const

Check if it is safe to call GetType method.

E_Choice

Choice variants.

DECLARE_INTERNAL_TYPE_INFO()

const TDel & GetDel(void) const

Get the variant data.

DECLARE_INTERNAL_TYPE_INFO()

bool IsDelins(void) const

Check if variant Delins is selected.

bool IsIns(void) const

Check if variant Ins is selected.

const TNa_sub & GetNa_sub(void) const

Get the variant data.

bool IsNa_identity(void) const

Check if variant Na_identity is selected.

bool CanGetFuzzy(void) const

Check if it is safe to call GetFuzzy method.

bool IsDup(void) const

Check if variant Dup is selected.

TFrameshift & SetFrameshift(void)

Select the variant.

virtual ~CSimpleVariant_Base(void)

NCBI_NS_NCBI::CSerialObject * m_object

TFuzzy GetFuzzy(void) const

Get the Fuzzy member data.

TConv & SetConv(void)

Select the variant.

bool IsSetFuzzy(void) const

Check if a value has been assigned to Fuzzy data member.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

bool IsProt_silent(void) const

Check if variant Prot_silent is selected.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

TRepeat & SetRepeat(void)

Select the variant.

CProteinExtension TProt_ext

virtual void Reset(void)

Reset the whole object.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

const TType & GetType(void) const

Get the Type member data.

TNa_identity & SetNa_identity(void)

Select the variant.

bool IsConv(void) const

Check if variant Conv is selected.

const TFrameshift & GetFrameshift(void) const

Get the variant data.

TFuzzy & SetFuzzy(void)

Assign a value to Fuzzy data member.

CSimpleVariant_Base(void)

TInv & SetInv(void)

Select the variant.

TDel & SetDel(void)

Select the variant.

const TProt_silent & GetProt_silent(void) const

Get the variant data.

TProt_ext & SetProt_ext(void)

Select the variant.

const TIns & GetIns(void) const

Get the variant data.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

static const char *const sm_SelectionNames[]

TProt_sub & SetProt_sub(void)

Select the variant.

TProt_silent & SetProt_silent(void)

Select the variant.

TNa_sub & SetNa_sub(void)

Select the variant.

TIns & SetIns(void)

Select the variant.

bool IsSetType(void) const

Check if a value has been assigned to Type data member.

void ResetFuzzy(void)

Reset Fuzzy data member.

const TNa_identity & GetNa_identity(void) const

Get the variant data.

const TConv & GetConv(void) const

Get the variant data.

E_Choice Which(void) const

Which variant is currently selected.

const TRepeat & GetRepeat(void) const

Get the variant data.

const TProt_ext & GetProt_ext(void) const

Get the variant data.

@ e_not_set

No variant selected.

@ e_Repeat

short-sequence repeat (ssr)

@ e_MaxChoice

== e_Frameshift+1

const GenericPointer< typename T::ValueType > T2 value

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