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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/SimpleVariant___8cpp_source.html below:

NCBI C++ ToolKit: src/objects/varrep/SimpleVariant_.cpp Source File

m_object->RemoveReference();

(m_object =

(pool) ncbi::objects::CNaIdentity())->

();

(m_object =

(pool) ncbi::objects::CNaSub())->

();

(m_object =

(pool) ncbi::objects::CProteinSub())->

();

(m_object =

(pool) ncbi::objects::CAaLocation())->

();

(m_object =

(pool) ncbi::objects::CDeletion())->

();

(m_object =

(pool) ncbi::objects::CDuplication())->

();

(m_object =

(pool) ncbi::objects::CInversion())->

();

(m_object =

(pool) ncbi::objects::CInsertion())->

();

(m_object =

(pool) ncbi::objects::CConversion())->

();

(m_object =

(pool) ncbi::objects::CDelins())->

();

(m_object =

(pool) ncbi::objects::CRepeat())->

();

(m_object =

(pool) ncbi::objects::CProteinExtension())->

();

(m_object =

(pool) ncbi::objects::CFrameshift())->

();

NCBI_NS_NCBI::CInvalidChoiceSelection::GetName(index, sm_SelectionNames,

(sm_SelectionNames)/

(sm_SelectionNames[0]));

NCBI_NS_NCBI::CInvalidChoiceSelection(

,

, m_choice, index, sm_SelectionNames,

(sm_SelectionNames)/

(sm_SelectionNames[0]));

CheckSelected(e_Na_identity);

( m_choice != e_Na_identity || m_object != ptr ) {

m_choice = e_Na_identity;

CheckSelected(e_Na_sub);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Na_sub || m_object != ptr ) {

CheckSelected(e_Prot_sub);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Prot_sub || m_object != ptr ) {

m_choice = e_Prot_sub;

CheckSelected(e_Prot_silent);

( m_choice != e_Prot_silent || m_object != ptr ) {

m_choice = e_Prot_silent;

CheckSelected(e_Del);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Del || m_object != ptr ) {

CheckSelected(e_Dup);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Dup || m_object != ptr ) {

CheckSelected(e_Inv);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Inv || m_object != ptr ) {

CheckSelected(e_Ins);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Ins || m_object != ptr ) {

CheckSelected(e_Conv);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Conv || m_object != ptr ) {

CheckSelected(e_Delins);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Delins || m_object != ptr ) {

CheckSelected(e_Repeat);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Repeat || m_object != ptr ) {

CheckSelected(e_Prot_ext);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Prot_ext || m_object != ptr ) {

m_choice = e_Prot_ext;

CheckSelected(e_Frameshift);

*

*

(m_object);

( m_choice != e_Frameshift || m_object != ptr ) {

m_choice = e_Frameshift;

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

->RandomOrder();

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

BEGIN_NAMED_BASE_CLASS_INFO("SimpleVariant", CSimpleVariant)

BEGIN_NAMED_CHOICE_INFO("", CSimpleVariant_Base::C_Type)

#define DIAG_COMPILE_INFO

Make compile time diagnostic information object to use in CNcbiDiag and CException.

#define MEMBER_PTR(MemberName)

#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)

#define ADD_NAMED_REF_CHOICE_VARIANT(MemberAlias, MemberName, ClassName)

#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)

#define SET_CLASS_MODULE(ModuleName)

#define SET_INTERNAL_NAME(OwnerName, MemberName)

#define SET_CHOICE_MODULE(ModuleName)

void AddReference(void) const

Add reference to object.

bool IsAllocatedInPool(void) const THROWS_NONE

Check if object is allocated in memory pool (not system heap)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TType & SetType(void)

Assign a value to Type data member.

void Reset(void)

Reset the whole object.

const TProt_sub & GetProt_sub(void) const

Get the variant data.

TDelins & SetDelins(void)

Select the variant.

const TDup & GetDup(void) const

Get the variant data.

const TDelins & GetDelins(void) const

Get the variant data.

const TInv & GetInv(void) const

Get the variant data.

TDup & SetDup(void)

Select the variant.

void ResetType(void)

Reset Type data member.

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

void ResetSelection(void)

Reset the selection (set it to e_not_set).

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

E_Choice

Choice variants.

const TDel & GetDel(void) const

Get the variant data.

const TNa_sub & GetNa_sub(void) const

Get the variant data.

TFrameshift & SetFrameshift(void)

Select the variant.

virtual ~CSimpleVariant_Base(void)

TConv & SetConv(void)

Select the variant.

TRepeat & SetRepeat(void)

Select the variant.

virtual void Reset(void)

Reset the whole object.

TNa_identity & SetNa_identity(void)

Select the variant.

const TFrameshift & GetFrameshift(void) const

Get the variant data.

CSimpleVariant_Base(void)

TInv & SetInv(void)

Select the variant.

TDel & SetDel(void)

Select the variant.

const TProt_silent & GetProt_silent(void) const

Get the variant data.

TProt_ext & SetProt_ext(void)

Select the variant.

const TIns & GetIns(void) const

Get the variant data.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

static const char *const sm_SelectionNames[]

TProt_sub & SetProt_sub(void)

Select the variant.

TProt_silent & SetProt_silent(void)

Select the variant.

TNa_sub & SetNa_sub(void)

Select the variant.

TIns & SetIns(void)

Select the variant.

void ResetFuzzy(void)

Reset Fuzzy data member.

const TNa_identity & GetNa_identity(void) const

Get the variant data.

const TConv & GetConv(void) const

Get the variant data.

const TRepeat & GetRepeat(void) const

Get the variant data.

const TProt_ext & GetProt_ext(void) const

Get the variant data.

@ e_not_set

No variant selected.

const GenericPointer< typename T::ValueType > T2 value

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