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NCBI C++ ToolKit: include/objects/seq/Seq_literal_.hpp Source File

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41 #ifndef OBJECTS_SEQ_SEQ_LITERAL_BASE_HPP 42 #define OBJECTS_SEQ_SEQ_LITERAL_BASE_HPP 48 #ifndef BEGIN_objects_SCOPE 49 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 50 # define END_objects_SCOPE END_SCOPE(objects) 110  bool

IsSetLength(

void

)

const

;

117  bool

CanGetLength(

void

)

const

;

120  void

ResetLength(

void

);

148  bool

IsSetFuzz(

void

)

const

;

155  bool

CanGetFuzz(

void

)

const

;

158  void

ResetFuzz(

void

);

176  TFuzz

& SetFuzz(

void

);

186  bool

IsSetSeq_data(

void

)

const

;

193  bool

CanGetSeq_data(

void

)

const

;

196  void

ResetSeq_data(

void

);

202  const TSeq_data

& GetSeq_data(

void

)

const

;

217  virtual void

Reset(

void

);

291  return m_Fuzz

.NotEmpty();

Base class for all serializable objects.

unsigned int TSeqPos

Type for sequence locations and lengths.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void ResetLength(void)

Reset Length data member.

Tparent::CMemberIndex< E_memberIndex, 4 > TmemberIndex

TLength & SetLength(void)

Assign a value to Length data member.

TLength GetLength(void) const

Get the Length member data.

bool CanGetLength(void) const

Check if it is safe to call GetLength method.

const TFuzz & GetFuzz(void) const

Get the Fuzz member data.

bool IsSetFuzz(void) const

could be unsure Check if a value has been assigned to Fuzz data member.

bool IsSetLength(void) const

must give a length in residues Check if a value has been assigned to Length data member.

CSeq_literal_Base(const CSeq_literal_Base &)

bool CanGetFuzz(void) const

Check if it is safe to call GetFuzz method.

bool CanGetSeq_data(void) const

Check if it is safe to call GetSeq_data method.

bool IsSetSeq_data(void) const

may have the data Check if a value has been assigned to Seq_data data member.

CRef< TSeq_data > m_Seq_data

const TSeq_data & GetSeq_data(void) const

Get the Seq_data member data.

DECLARE_INTERNAL_TYPE_INFO()

CSeq_literal_Base & operator=(const CSeq_literal_Base &)

const GenericPointer< typename T::ValueType > T2 value

static const CInt_fuzz * GetFuzz(const CDelta_item &delta)

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