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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Seq__interval___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seqloc/Seq_interval_.hpp Source File

41 #ifndef OBJECTS_SEQLOC_SEQ_INTERVAL_BASE_HPP 42 #define OBJECTS_SEQLOC_SEQ_INTERVAL_BASE_HPP 52 #ifndef BEGIN_objects_SCOPE 53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 54 # define END_objects_SCOPE END_SCOPE(objects) 119  bool

IsSetFrom(

void

)

const

;

126  bool

CanGetFrom(

void

)

const

;

129  void

ResetFrom(

void

);

135  TFrom

GetFrom(

void

)

const

;

147  TFrom

& SetFrom(

void

);

156  bool

IsSetTo(

void

)

const

;

163  bool

CanGetTo(

void

)

const

;

166  void

ResetTo(

void

);

172  TTo

GetTo(

void

)

const

;

193  bool

IsSetStrand(

void

)

const

;

200  bool

CanGetStrand(

void

)

const

;

203  void

ResetStrand(

void

);

231  bool

IsSetId(

void

)

const

;

238  bool

CanGetId(

void

)

const

;

241  void

ResetId(

void

);

268  bool

IsSetFuzz_from(

void

)

const

;

275  bool

CanGetFuzz_from(

void

)

const

;

278  void

ResetFuzz_from(

void

);

284  const TFuzz_from

& GetFuzz_from(

void

)

const

;

305  bool

IsSetFuzz_to(

void

)

const

;

312  bool

CanGetFuzz_to(

void

)

const

;

315  void

ResetFuzz_to(

void

);

321  const TFuzz_to

& GetFuzz_to(

void

)

const

;

336  virtual void

Reset(

void

);

507  return m_Id

.NotEmpty();

Base class for all serializable objects.

unsigned int TSeqPos

Type for sequence locations and lengths.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

ENa_strand GetStrand(const CSeq_loc &loc, CScope *scope=0)

Returns eNa_strand_unknown if multiple Bioseqs in loc Returns eNa_strand_other if multiple strands in...

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQLOC_EXPORT

const TFuzz_from & GetFuzz_from(void) const

Get the Fuzz_from member data.

bool CanGetFuzz_to(void) const

Check if it is safe to call GetFuzz_to method.

Tparent::CMemberIndex< E_memberIndex, 7 > TmemberIndex

ENa_strand

strand of nucleic acid

bool CanGetStrand(void) const

Check if it is safe to call GetStrand method.

const TId & GetId(void) const

Get the Id member data.

void ResetId(void)

Reset Id data member.

const TFuzz_to & GetFuzz_to(void) const

Get the Fuzz_to member data.

TFrom GetFrom(void) const

Get the From member data.

bool CanGetTo(void) const

Check if it is safe to call GetTo method.

CRef< TFuzz_to > m_Fuzz_to

TStrand & SetStrand(void)

Assign a value to Strand data member.

TFrom & SetFrom(void)

Assign a value to From data member.

bool IsSetTo(void) const

Check if a value has been assigned to To data member.

bool CanGetId(void) const

Check if it is safe to call GetId method.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

bool IsSetFuzz_to(void) const

Check if a value has been assigned to Fuzz_to data member.

void ResetFrom(void)

Reset From data member.

TId & SetId(void)

Assign a value to Id data member.

TStrand GetStrand(void) const

Get the Strand member data.

bool IsSetId(void) const

WARNING: this used to be optional Check if a value has been assigned to Id data member.

TTo GetTo(void) const

Get the To member data.

TTo & SetTo(void)

Assign a value to To data member.

bool IsSetFrom(void) const

Check if a value has been assigned to From data member.

CSeq_interval_Base(const CSeq_interval_Base &)

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetFuzz_from(void) const

Check if a value has been assigned to Fuzz_from data member.

void ResetStrand(void)

Reset Strand data member.

CRef< TFuzz_from > m_Fuzz_from

void ResetTo(void)

Reset To data member.

CSeq_interval_Base & operator=(const CSeq_interval_Base &)

bool CanGetFrom(void) const

Check if it is safe to call GetFrom method.

bool CanGetFuzz_from(void) const

Check if it is safe to call GetFuzz_from method.

const GenericPointer< typename T::ValueType > T2 value


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