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NCBI C++ ToolKit: include/objects/seqloc/Seq_interval.hpp Source File

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FlipStrand(

);

x_IsMinusStrand(

)

;

ESeqLocExtremes

Used to determine the meaning of a location's Start/Stop positions.

TSeqPos GetLength(void) const

CSeq_interval(const CSeq_interval &)

CSeq_interval_Base Tparent

unsigned int TSeqPos

Type for sequence locations and lengths.

TSeqPos GetStop(const CSeq_loc &loc, CScope *scope, ESeqLocExtremes ext=eExtreme_Positional)

If only one CBioseq is represented by CSeq_loc, returns the position at the stop of the location.

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

TSeqPos GetStart(const CSeq_loc &loc, CScope *scope, ESeqLocExtremes ext=eExtreme_Positional)

If only one CBioseq is represented by CSeq_loc, returns the position at the start of the location.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQLOC_EXPORT

ENa_strand

strand of nucleic acid

TFrom GetFrom(void) const

Get the From member data.

TStrand & SetStrand(void)

Assign a value to Strand data member.

TFrom & SetFrom(void)

Assign a value to From data member.

TId & SetId(void)

Assign a value to Id data member.

TTo GetTo(void) const

Get the To member data.

TTo & SetTo(void)

Assign a value to To data member.

CSeq_interval_Base & operator=(const CSeq_interval_Base &)

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