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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Seq__interval_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seqloc/Seq_interval.cpp Source File

bool IsReverse(ENa_strand s)

ENa_strand Reverse(ENa_strand s)

ESeqLocExtremes

Used to determine the meaning of a location's Start/Stop positions.

@ eExtreme_Biological

5' and 3'

bool IsTruncatedStop(ESeqLocExtremes ext) const

bool IsPartialStop(ESeqLocExtremes ext) const

void SetTruncatedStart(bool val, ESeqLocExtremes ext)

set / remove e_Lim fuzz on start or stop (tl/tr - indicating removed parts of the seq-loc)

TSeqPos GetStart(ESeqLocExtremes ext) const

bool x_IsMinusStrand(void) const

bool IsPartialStart(ESeqLocExtremes ext) const

bool IsTruncatedStart(ESeqLocExtremes ext) const

check if parts of the seq-loc are missing

TSeqPos GetStop(ESeqLocExtremes ext) const

void SetTruncatedStop(bool val, ESeqLocExtremes ext)

void SetPartialStart(bool val, ESeqLocExtremes ext)

void SetPartialStop(bool val, ESeqLocExtremes ext)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsLim(void) const

Check if variant Lim is selected.

TLim GetLim(void) const

Get the variant data.

TLim & SetLim(void)

Select the variant.

@ eLim_tl

space to left of position

@ eLim_tr

space to right of position

const TFuzz_from & GetFuzz_from(void) const

Get the Fuzz_from member data.

void ResetFuzz_to(void)

Reset Fuzz_to data member.

TFuzz_from & SetFuzz_from(void)

Assign a value to Fuzz_from data member.

const TFuzz_to & GetFuzz_to(void) const

Get the Fuzz_to member data.

TFrom GetFrom(void) const

Get the From member data.

TFuzz_to & SetFuzz_to(void)

Assign a value to Fuzz_to data member.

TStrand & SetStrand(void)

Assign a value to Strand data member.

void ResetFuzz_from(void)

Reset Fuzz_from data member.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

bool IsSetFuzz_to(void) const

Check if a value has been assigned to Fuzz_to data member.

TStrand GetStrand(void) const

Get the Strand member data.

TTo GetTo(void) const

Get the To member data.

bool IsSetFuzz_from(void) const

Check if a value has been assigned to Fuzz_from data member.

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