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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Seq__inst___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seq/Seq_inst_.hpp Source File

eTopology_not_set = 0,

eTopology_linear = 1,

eTopology_circular = 2,

eTopology_tandem = 3,

eTopology_other = 255

IsSetRepr(

)

;

CanGetRepr(

)

;

ResetRepr(

);

GetRepr(

)

;

& SetRepr(

);

IsSetMol(

)

;

CanGetMol(

)

;

ResetMol(

);

GetMol(

)

;

& SetMol(

);

IsSetLength(

)

;

CanGetLength(

)

;

ResetLength(

);

IsSetFuzz(

)

;

CanGetFuzz(

)

;

ResetFuzz(

);

& SetFuzz(

);

IsSetTopology(

)

;

CanGetTopology(

)

;

ResetTopology(

);

SetDefaultTopology(

);

IsSetStrand(

)

;

CanGetStrand(

)

;

ResetStrand(

);

IsSetSeq_data(

)

;

CanGetSeq_data(

)

;

ResetSeq_data(

);

& GetSeq_data(

)

;

IsSetExt(

)

;

CanGetExt(

)

;

ResetExt(

);

& GetExt(

)

;

& SetExt(

);

IsSetHist(

)

;

CanGetHist(

)

;

ResetHist(

);

& GetHist(

)

;

& SetHist(

);

Reset(

);

.NotEmpty();

.NotEmpty();

.NotEmpty();

*** Instances of sequences ******************************* * the sequence data itself

Base class for all serializable objects.

unsigned int TSeqPos

Type for sequence locations and lengths.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

ENa_strand GetStrand(const CSeq_loc &loc, CScope *scope=0)

Returns eNa_strand_unknown if multiple Bioseqs in loc Returns eNa_strand_other if multiple strands in...

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

void ResetStrand(void)

Reset Strand data member.

TRepr GetRepr(void) const

Get the Repr member data.

bool IsSetSeq_data(void) const

the sequence Check if a value has been assigned to Seq_data data member.

TRepr & SetRepr(void)

Assign a value to Repr data member.

TStrand GetStrand(void) const

Get the Strand member data.

bool CanGetStrand(void) const

Check if it is safe to call GetStrand method.

ERepr

representation class

void ResetMol(void)

Reset Mol data member.

CRef< TSeq_data > m_Seq_data

TTopology GetTopology(void) const

Get the Topology member data.

bool CanGetMol(void) const

Check if it is safe to call GetMol method.

bool IsSetRepr(void) const

Check if a value has been assigned to Repr data member.

bool IsSetMol(void) const

Check if a value has been assigned to Mol data member.

const TFuzz & GetFuzz(void) const

Get the Fuzz member data.

bool CanGetTopology(void) const

Check if it is safe to call GetTopology method.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

bool CanGetLength(void) const

Check if it is safe to call GetLength method.

Tparent::CMemberIndex< E_memberIndex, 10 > TmemberIndex

bool IsSetHist(void) const

sequence history Check if a value has been assigned to Hist data member.

bool IsSetExt(void) const

extensions for special types Check if a value has been assigned to Ext data member.

DECLARE_INTERNAL_TYPE_INFO()

TLength GetLength(void) const

Get the Length member data.

TMol GetMol(void) const

Get the Mol member data.

bool CanGetFuzz(void) const

Check if it is safe to call GetFuzz method.

void SetDefaultTopology(void)

Assign default value to Topology data member.

bool IsSetLength(void) const

length of sequence in residues Check if a value has been assigned to Length data member.

bool CanGetHist(void) const

Check if it is safe to call GetHist method.

const THist & GetHist(void) const

Get the Hist member data.

const TExt & GetExt(void) const

Get the Ext member data.

bool CanGetRepr(void) const

Check if it is safe to call GetRepr method.

void ResetTopology(void)

Reset Topology data member.

ETopology

topology of molecule

TTopology & SetTopology(void)

Assign a value to Topology data member.

EMol

molecule class in living organism

TMol & SetMol(void)

Assign a value to Mol data member.

EStrand

strandedness in living organism

bool CanGetExt(void) const

Check if it is safe to call GetExt method.

bool CanGetSeq_data(void) const

Check if it is safe to call GetSeq_data method.

void ResetLength(void)

Reset Length data member.

CSeq_inst_Base & operator=(const CSeq_inst_Base &)

TLength & SetLength(void)

Assign a value to Length data member.

const TSeq_data & GetSeq_data(void) const

Get the Seq_data member data.

void ResetRepr(void)

Reset Repr data member.

bool IsSetTopology(void) const

Check if a value has been assigned to Topology data member.

bool IsSetFuzz(void) const

length uncertainty Check if a value has been assigned to Fuzz data member.

CSeq_inst_Base(const CSeq_inst_Base &)

TStrand & SetStrand(void)

Assign a value to Strand data member.

const GenericPointer< typename T::ValueType > T2 value

static const CInt_fuzz * GetFuzz(const CDelta_item &delta)

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