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NCBI C++ ToolKit: include/objects/seq/Seq_ext_.hpp Source File

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41 #ifndef OBJECTS_SEQ_SEQ_EXT_BASE_HPP 42 #define OBJECTS_SEQ_SEQ_EXT_BASE_HPP 48 #ifndef BEGIN_objects_SCOPE 49 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 50 # define END_objects_SCOPE END_SCOPE(objects) 105  virtual void

Reset(

void

);

108  virtual void

ResetSelection(

void

);

114 

E_Choice Which(

void

)

const

;

120  void

CheckSelected(E_Choice index)

const

;

126 

NCBI_NORETURN

void

ThrowInvalidSelection(E_Choice index)

const

;

134  static string

SelectionName(E_Choice index);

167  bool

IsSeg(

void

)

const

;

173  const TSeg

& GetSeg(

void

)

const

;

179  TSeg

& SetSeg(

void

);

193  bool

IsRef(

void

)

const

;

199  const TRef

& GetRef(

void

)

const

;

205  TRef

& SetRef(

void

);

219  bool

IsMap(

void

)

const

;

225  const TMap

& GetMap(

void

)

const

;

231  TMap

& SetMap(

void

);

245  bool

IsDelta(

void

)

const

;

251  const TDelta

& GetDelta(

void

)

const

;

257  TDelta

& SetDelta(

void

);

274  static const char

*

const

sm_SelectionNames[];

*** Sequence Extensions ********************************** * for representing more complex types * co...

Base class for all serializable objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsMap(void) const

Check if variant Map is selected.

bool IsRef(void) const

Check if variant Ref is selected.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

CSeq_ext_Base & operator=(const CSeq_ext_Base &)

CSeq_ext_Base(const CSeq_ext_Base &)

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

bool IsSeg(void) const

Check if variant Seg is selected.

DECLARE_INTERNAL_TYPE_INFO()

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

bool IsDelta(void) const

Check if variant Delta is selected.

E_Choice

Choice variants.

E_Choice Which(void) const

Which variant is currently selected.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

virtual void ResetSelection(void)

Reset the selection (set it to e_not_set).

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

NCBI_NS_NCBI::CSerialObject * m_object

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

@ e_not_set

No variant selected.

@ e_Seg

segmented sequences

@ e_Map

ordered map of markers

@ e_Ref

hot link to another sequence (a view)

const GenericPointer< typename T::ValueType > T2 value

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