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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Seq__data___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seq/Seq_data_.hpp Source File

Reset(

);

ResetSelection(

);

E_Choice Which(

)

;

CheckSelected(E_Choice index)

;

NCBI_NORETURN

ThrowInvalidSelection(E_Choice index)

;

SelectionName(E_Choice index);

IsIupacna(

)

;

& GetIupacna(

)

;

IsIupacaa(

)

;

& GetIupacaa(

)

;

IsNcbi2na(

)

;

& GetNcbi2na(

)

;

IsNcbi4na(

)

;

& GetNcbi4na(

)

;

IsNcbi8na(

)

;

& GetNcbi8na(

)

;

IsNcbipna(

)

;

& GetNcbipna(

)

;

IsNcbi8aa(

)

;

& GetNcbi8aa(

)

;

IsNcbieaa(

)

;

& GetNcbieaa(

)

;

IsNcbipaa(

)

;

& GetNcbipaa(

)

;

IsNcbistdaa(

)

;

& GetNcbistdaa(

)

;

(

)

;

& GetGap(

)

;

& SetGap(

);

*

sm_SelectionNames[];

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

*** Various internal sequence representations ************ * all are controlled, fixed length forms s...

Base class for all serializable objects.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const TIupacaa & GetIupacaa(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TNcbipna > m_Ncbipna

bool IsNcbipna(void) const

Check if variant Ncbipna is selected.

TNcbipna & SetNcbipna(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TNcbi4na > m_Ncbi4na

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

bool IsNcbieaa(void) const

Check if variant Ncbieaa is selected.

bool IsNcbi8aa(void) const

Check if variant Ncbi8aa is selected.

NCBI_NS_NCBI::CUnionBuffer< TNcbieaa > m_Ncbieaa

NCBI_NS_NCBI::CUnionBuffer< TNcbi8na > m_Ncbi8na

bool IsIupacaa(void) const

Check if variant Iupacaa is selected.

TNcbi8aa & SetNcbi8aa(void)

Select the variant.

const TIupacna & GetIupacna(void) const

Get the variant data.

bool IsNcbistdaa(void) const

Check if variant Ncbistdaa is selected.

const TNcbipna & GetNcbipna(void) const

Get the variant data.

const TNcbipaa & GetNcbipaa(void) const

Get the variant data.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

TNcbipaa & SetNcbipaa(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TNcbistdaa > m_Ncbistdaa

NCBI_NS_NCBI::CUnionBuffer< TNcbipaa > m_Ncbipaa

virtual void ResetSelection(void)

Reset the selection (set it to e_not_set).

const TNcbi8aa & GetNcbi8aa(void) const

Get the variant data.

TNcbieaa & SetNcbieaa(void)

Select the variant.

NCBI_NS_NCBI::CSerialObject * m_object

CSeq_data_Base & operator=(const CSeq_data_Base &)

E_Choice

Choice variants.

CSeq_data_Base(const CSeq_data_Base &)

bool IsNcbi4na(void) const

Check if variant Ncbi4na is selected.

bool IsNcbi8na(void) const

Check if variant Ncbi8na is selected.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

TIupacna & SetIupacna(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TIupacaa > m_Iupacaa

NCBI_NS_NCBI::CUnionBuffer< TNcbi8aa > m_Ncbi8aa

DECLARE_INTERNAL_TYPE_INFO()

const TNcbieaa & GetNcbieaa(void) const

Get the variant data.

bool IsNcbipaa(void) const

Check if variant Ncbipaa is selected.

NCBI_NS_NCBI::CUnionBuffer< TNcbi2na > m_Ncbi2na

NCBI_NS_NCBI::CUnionBuffer< TIupacna > m_Iupacna

const TNcbistdaa & GetNcbistdaa(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TNcbipna > m_Ncbipna

TNcbi8na & SetNcbi8na(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TNcbi2na > m_Ncbi2na

TNcbistdaa & SetNcbistdaa(void)

Select the variant.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

const TNcbi4na & GetNcbi4na(void) const

Get the variant data.

TNcbi2na & SetNcbi2na(void)

Select the variant.

const TNcbi2na & GetNcbi2na(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TNcbi4na > m_Ncbi4na

NCBI_NS_NCBI::CUnionBuffer< TIupacna > m_Iupacna

bool IsGap(void) const

Check if variant Gap is selected.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

NCBI_NS_NCBI::CUnionBuffer< TNcbistdaa > m_Ncbistdaa

NCBI_NS_NCBI::CUnionBuffer< TNcbipaa > m_Ncbipaa

bool IsNcbi2na(void) const

Check if variant Ncbi2na is selected.

TNcbi4na & SetNcbi4na(void)

Select the variant.

const TNcbi8na & GetNcbi8na(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TIupacaa > m_Iupacaa

TIupacaa & SetIupacaa(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TNcbi8na > m_Ncbi8na

NCBI_NS_NCBI::CUnionBuffer< TNcbieaa > m_Ncbieaa

bool IsIupacna(void) const

Check if variant Iupacna is selected.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

NCBI_NS_NCBI::CUnionBuffer< TNcbi8aa > m_Ncbi8aa

E_Choice Which(void) const

Which variant is currently selected.

@ e_not_set

No variant selected.

@ e_Ncbipna

nucleic acid probabilities

@ e_Ncbieaa

extended ASCII 1 letter aa codes

@ e_Ncbistdaa

consecutive codes for std aas

@ e_Ncbi2na

2 bit nucleic acid code

@ e_Iupacna

IUPAC 1 letter nuc acid code.

@ e_Ncbipaa

amino acid probabilities

@ e_Ncbi8na

8 bit extended nucleic acid code

@ e_Ncbi4na

4 bit nucleic acid code

@ e_Iupacaa

IUPAC 1 letter amino acid code.

@ e_Ncbi8aa

8 bit extended amino acid codes

const GenericPointer< typename T::ValueType > T2 value

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