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NCBI C++ ToolKit: include/objects/seqcode/Seq_code_table_.hpp Source File

41 #ifndef OBJECTS_SEQCODE_SEQ_CODE_TABLE_BASE_HPP 42 #define OBJECTS_SEQCODE_SEQ_CODE_TABLE_BASE_HPP 54 #ifndef BEGIN_objects_SCOPE 55 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 56 # define END_objects_SCOPE END_SCOPE(objects) 127  bool

IsSetSymbol(

void

)

const

;

134  bool

CanGetSymbol(

void

)

const

;

137  void

ResetSymbol(

void

);

143  const TSymbol

& GetSymbol(

void

)

const

;

165  bool

IsSetName(

void

)

const

;

172  bool

CanGetName(

void

)

const

;

175  void

ResetName(

void

);

181  const TName

& GetName(

void

)

const

;

194  TName

& SetName(

void

);

216  typedef

list< CRef< C_E_Table > >

TTable

;

242  bool

IsSetCode(

void

)

const

;

249  bool

CanGetCode(

void

)

const

;

252  void

ResetCode(

void

);

258  TCode

GetCode(

void

)

const

;

270  TCode

& SetCode(

void

);

280  bool

IsSetNum(

void

)

const

;

287  bool

CanGetNum(

void

)

const

;

290  void

ResetNum(

void

);

296  TNum

GetNum(

void

)

const

;

308  TNum

& SetNum(

void

);

318  bool

IsSetOne_letter(

void

)

const

;

325  bool

CanGetOne_letter(

void

)

const

;

328  void

ResetOne_letter(

void

);

356  bool

IsSetStart_at(

void

)

const

;

363  bool

CanGetStart_at(

void

)

const

;

366  void

ResetStart_at(

void

);

369  void

SetDefaultStart_at(

void

);

397  bool

IsSetTable(

void

)

const

;

404  bool

CanGetTable(

void

)

const

;

407  void

ResetTable(

void

);

413  const TTable

& GetTable(

void

)

const

;

419  TTable

& SetTable(

void

);

429  bool

IsSetComps(

void

)

const

;

436  bool

CanGetComps(

void

)

const

;

439  void

ResetComps(

void

);

445  const TComps

& GetComps(

void

)

const

;

451  TComps

& SetComps(

void

);

454  virtual void

Reset(

void

);

490  return

IsSetSymbol();

496  if

(!CanGetSymbol()) {

512

m_Symbol = std::forward<CSeq_code_table_Base::C_E_Table::TSymbol>(

value

);

520  if

(!IsSetSymbol()) {

559

m_Name = std::forward<CSeq_code_table_Base::C_E_Table::TName>(

value

);

User-defined methods of the data storage class.

for names of coded values

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQCODE_EXPORT

void ResetCode(void)

Reset Code data member.

bool CanGetStart_at(void) const

Check if it is safe to call GetStart_at method.

DECLARE_INTERNAL_TYPE_INFO()

list< CRef< C_E_Table > > m_Table

TNum GetNum(void) const

Get the Num member data.

void ResetOne_letter(void)

Reset One_letter data member.

void SetDefaultStart_at(void)

Assign default value to Start_at data member.

bool IsSetName(void) const

Check if a value has been assigned to Name data member.

bool CanGetSymbol(void) const

Check if it is safe to call GetSymbol method.

TCode GetCode(void) const

Get the Code member data.

TNum & SetNum(void)

Assign a value to Num data member.

list< CRef< C_E_Table > > TTable

bool CanGetTable(void) const

Check if it is safe to call GetTable method.

bool IsSetCode(void) const

name of code Check if a value has been assigned to Code data member.

const TName & GetName(void) const

Get the Name member data.

const TComps & GetComps(void) const

Get the Comps member data.

void ResetStart_at(void)

Reset Start_at data member.

bool IsSetOne_letter(void) const

symbol is ALWAYS 1 letter? Check if a value has been assigned to One_letter data member.

TTable & SetTable(void)

Assign a value to Table data member.

bool IsSetSymbol(void) const

the printed symbol or letter Check if a value has been assigned to Symbol data member.

TSymbol & SetSymbol(void)

Assign a value to Symbol data member.

CSeq_code_table_Base(const CSeq_code_table_Base &)

const TSymbol & GetSymbol(void) const

Get the Symbol member data.

DECLARE_INTERNAL_TYPE_INFO()

CSeq_code_table_Base & operator=(const CSeq_code_table_Base &)

TStart_at GetStart_at(void) const

Get the Start_at member data.

bool CanGetNum(void) const

Check if it is safe to call GetNum method.

bool IsSetNum(void) const

number of rows in table Check if a value has been assigned to Num data member.

bool CanGetCode(void) const

Check if it is safe to call GetCode method.

ESeq_code_type

sequence representations

const TTable & GetTable(void) const

Get the Table member data.

Tparent::CMemberIndex< E_memberIndex, 7 > TmemberIndex

void ResetNum(void)

Reset Num data member.

bool CanGetOne_letter(void) const

Check if it is safe to call GetOne_letter method.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

bool CanGetComps(void) const

Check if it is safe to call GetComps method.

TOne_letter & SetOne_letter(void)

Assign a value to One_letter data member.

TComps & SetComps(void)

Assign a value to Comps data member.

TCode & SetCode(void)

Assign a value to Code data member.

TStart_at & SetStart_at(void)

Assign a value to Start_at data member.

bool IsSetTable(void) const

an explanatory name or string Check if a value has been assigned to Table data member.

bool CanGetName(void) const

Check if it is safe to call GetName method.

TName & SetName(void)

Assign a value to Name data member.

bool IsSetStart_at(void) const

index offset of first element Check if a value has been assigned to Start_at data member.

C_E_Table(const C_E_Table &)

TOne_letter GetOne_letter(void) const

Get the One_letter member data.

bool IsSetComps(void) const

pointers to complement nuc acid Check if a value has been assigned to Comps data member.

C_E_Table & operator=(const C_E_Table &)

const GenericPointer< typename T::ValueType > T2 value


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