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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Seq__annot___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seq/Seq_annot_.hpp Source File

ResetSelection(

);

E_Choice Which(

)

;

CheckSelected(E_Choice index)

;

NCBI_NORETURN

ThrowInvalidSelection(E_Choice index)

;

SelectionName(E_Choice index);

list< CRef< CSeq_align > >

;

list< CRef< CSeq_graph > >

;

list< CRef< CSeq_id > >

;

list< CRef< CSeq_loc > >

;

IsFtable(

)

;

& GetFtable(

)

;

IsAlign(

)

;

& GetAlign(

)

;

& SetAlign(

);

IsGraph(

)

;

& GetGraph(

)

;

& SetGraph(

);

IsIds(

)

;

& SetIds(

);

IsLocs(

)

;

& GetLocs(

)

;

& SetLocs(

);

IsSeq_table(

)

;

& GetSeq_table(

)

;

*

sm_SelectionNames[];

NCBI_NS_NCBI::CUnionBuffer<TIds>

;

NCBI_NS_NCBI::CUnionBuffer<TLocs>

;

list< CRef< CAnnot_id > >

;

IsSetId(

)

;

CanGetId(

)

;

ResetId(

);

IsSetDb(

)

;

CanGetDb(

)

;

ResetDb(

);

GetDb(

)

;

IsSetName(

)

;

CanGetName(

)

;

ResetName(

);

& GetName(

)

;

& SetName(

);

IsSetDesc(

)

;

CanGetDesc(

)

;

ResetDesc(

);

& GetDesc(

)

;

& SetDesc(

);

IsSetData(

)

;

CanGetData(

)

;

ResetData(

);

& GetData(

)

;

& SetData(

);

Reset(

);

list< CRef< CAnnot_id > >

;

( m_choice != index )

ThrowInvalidSelection(index);

DoSelect(index, pool);

Select(index, reset, 0);

m_choice == e_Ftable;

CheckSelected(e_Ftable);

m_choice == e_Align;

CheckSelected(e_Align);

m_choice == e_Graph;

CheckSelected(e_Graph);

m_choice == e_Ids;

CheckSelected(e_Ids);

m_choice == e_Locs;

CheckSelected(e_Locs);

m_choice == e_Seq_table;

= std::forward<CSeq_annot_Base::TName>(

);

.NotEmpty();

namespace ncbi::objects::

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

static string UnassignedString(void)

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

bool NotEmpty(void) const THROWS_NONE

Check if CRef is not empty – pointing to an object and has a non-null value.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TAlign & SetAlign(void)

Select the variant.

list< CRef< CAnnot_id > > m_Id

TName & SetName(void)

Assign a value to Name data member.

bool IsAlign(void) const

Check if variant Align is selected.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

bool CanGetId(void) const

Check if it is safe to call GetId method.

list< CRef< CSeq_id > > TIds

const TGraph & GetGraph(void) const

Get the variant data.

const TLocs & GetLocs(void) const

Get the variant data.

list< CRef< CSeq_graph > > TGraph

void ResetDb(void)

Reset Db data member.

TFtable & SetFtable(void)

Select the variant.

const TName & GetName(void) const

Get the Name member data.

NCBI_NS_NCBI::CUnionBuffer< TFtable > m_Ftable

list< CRef< CAnnot_id > > TId

bool IsSetName(void) const

source if "other" above Check if a value has been assigned to Name data member.

DECLARE_INTERNAL_TYPE_INFO()

Tparent::CMemberIndex< E_memberIndex, 6 > TmemberIndex

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

list< CRef< CSeq_align > > TAlign

void ResetData(void)

Reset Data data member.

const TIds & GetIds(void) const

Get the variant data.

TDb & SetDb(void)

Assign a value to Db data member.

E_Choice

Choice variants.

bool IsSetDb(void) const

Check if a value has been assigned to Db data member.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool CanGetDesc(void) const

Check if it is safe to call GetDesc method.

bool IsSetDesc(void) const

used only for stand alone Seq-annots Check if a value has been assigned to Desc data member.

NCBI_NS_NCBI::CUnionBuffer< TIds > m_Ids

const TAlign & GetAlign(void) const

Get the variant data.

DECLARE_INTERNAL_TYPE_INFO()

NCBI_NS_NCBI::CUnionBuffer< TGraph > m_Graph

bool IsSetId(void) const

Check if a value has been assigned to Id data member.

TDb GetDb(void) const

Get the Db member data.

bool IsGraph(void) const

Check if variant Graph is selected.

TGraph & SetGraph(void)

Select the variant.

const TId & GetId(void) const

Get the Id member data.

list< CRef< CSeq_loc > > TLocs

const TFtable & GetFtable(void) const

Get the variant data.

list< CRef< CSeq_feat > > TFtable

NCBI_NS_NCBI::CUnionBuffer< TAlign > m_Align

bool IsFtable(void) const

Check if variant Ftable is selected.

const TData & GetData(void) const

Get the Data member data.

TLocs & SetLocs(void)

Select the variant.

TData & SetData(void)

Assign a value to Data data member.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

bool CanGetDb(void) const

Check if it is safe to call GetDb method.

NCBI_NS_NCBI::CUnionBuffer< TLocs > m_Locs

TId & SetId(void)

Assign a value to Id data member.

C_Data & operator=(const C_Data &)

bool IsSeq_table(void) const

Check if variant Seq_table is selected.

TIds & SetIds(void)

Select the variant.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

bool IsIds(void) const

Check if variant Ids is selected.

NCBI_NS_NCBI::CSerialObject * m_object

bool CanGetName(void) const

Check if it is safe to call GetName method.

bool CanGetData(void) const

Check if it is safe to call GetData method.

E_Choice Which(void) const

Which variant is currently selected.

CSeq_annot_Base(const CSeq_annot_Base &)

bool IsLocs(void) const

Check if variant Locs is selected.

CSeq_annot_Base & operator=(const CSeq_annot_Base &)

@ e_Ids

used for communication between tools

@ e_Locs

used for communication between tools

const GenericPointer< typename T::ValueType > T2 value

static bool GetIds(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)

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