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NCBI C++ ToolKit: src/objects/seq/Seq_annot.cpp Source File

TDesc::Tdata::iterator iter =

().

().begin();

((*iter)->IsName() ) {

TDesc::Tdata::iterator iter =

().

().begin();

((*iter)->IsTitle() ) {

TDesc::Tdata::iterator iter =

().

().begin();

((*iter)->IsCreate_date() ) {

TDesc::Tdata::iterator iter =

().

().begin();

((*iter)->IsUpdate_date() ) {

*acc_ptr = full_name.substr(0, pos);

( num_pos+1 == full_name.size() && full_name[num_pos] ==

) {

( zoom_level_ptr ) {

*zoom_level_ptr = -1;

( zoom_level_ptr ) {

*zoom_level_ptr = zoom_level;

*acc_ptr = full_name;

( zoom_level_ptr ) {

( zoom_level == -1 ) {

( incl_level != zoom_level ) {

<<acc<<

<<zoom_level);

:

;

static const size_t NCBI_ANNOT_TRACK_ZOOM_LEVEL_SUFFIX_LEN

#define NCBI_ANNOT_TRACK_ZOOM_LEVEL_SUFFIX

Named annotations zoom level can be encoded in the accession string with @ suffix,...

virtual const char * GetErrCodeString(void) const override

Get error code interpreted as text.

void AddUserObject(CUser_object &obj)

void SetTitle(const string &title)

bool IsSeq_table(void) const

static string CombineWithZoomLevel(const string &acc, int zoom_level)

Combine accession string and zoom level into a string with separator.

void SetNameDesc(const string &name)

void SetCreateDate(const CTime &dt)

static void AddZoomLevel(string &acc, int zoom_level)

void SetUpdateDate(const CTime &dt)

void AddName(const string &name)

void SetTitleDesc(const string &title)

static bool ExtractZoomLevel(const string &full_name, string *acc_ptr, int *zoom_level_ptr)

Extract optional zoom level suffix from named annotation string.

void AddTitle(const string &title)

bool IsFtable(void) const

void AddComment(const string &comment)

TErrCode GetErrCode(void) const

Get error code.

#define NCBI_THROW_FMT(exception_class, err_code, message)

The same as NCBI_THROW but with message processed as output to ostream.

virtual const char * GetErrCodeString(void) const

Get error code interpreted as text.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

NCBI_NS_STD::string::size_type SIZE_TYPE

static int StringToInt(const CTempString str, TStringToNumFlags flags=0, int base=10)

Convert string to int.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

Tdata & Set(void)

Assign a value to data member.

TTitle & SetTitle(void)

Select the variant.

bool IsAlign(void) const

Check if variant Align is selected.

TName & SetName(void)

Select the variant.

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

TUser & SetUser(void)

Select the variant.

TComment & SetComment(void)

Select the variant.

bool IsGraph(void) const

Check if variant Graph is selected.

bool IsFtable(void) const

Check if variant Ftable is selected.

const TData & GetData(void) const

Get the Data member data.

bool IsSeq_table(void) const

Check if variant Seq_table is selected.

TUpdate_date & SetUpdate_date(void)

Select the variant.

bool IsIds(void) const

Check if variant Ids is selected.

TDesc & SetDesc(void)

Assign a value to Desc data member.

TCreate_date & SetCreate_date(void)

Select the variant.

bool IsLocs(void) const

Check if variant Locs is selected.

Definition of all error codes used in objects libraries.

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