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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Seq__align___8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seqalign/Seq_align_.cpp Source File

m_object->RemoveReference();

m_Dendiag.Construct();

(m_object =

(pool) ncbi::objects::CDense_seg())->

();

(m_object =

(pool) ncbi::objects::CPacked_seg())->

();

(m_object =

(pool) ncbi::objects::CSeq_align_set())->

();

(m_object =

(pool) ncbi::objects::CSpliced_seg())->

();

(m_object =

(pool) ncbi::objects::CSparse_seg())->

();

NCBI_NS_NCBI::CInvalidChoiceSelection::GetName(index, sm_SelectionNames,

(sm_SelectionNames)/

(sm_SelectionNames[0]));

NCBI_NS_NCBI::CInvalidChoiceSelection(

,

, m_choice, index, sm_SelectionNames,

(sm_SelectionNames)/

(sm_SelectionNames[0]));

CheckSelected(e_Denseg);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Denseg || m_object != ptr ) {

CheckSelected(e_Packed);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Packed || m_object != ptr ) {

CheckSelected(e_Disc);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Disc || m_object != ptr ) {

CheckSelected(e_Spliced);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Spliced || m_object != ptr ) {

m_choice = e_Spliced;

CheckSelected(e_Sparse);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Sparse || m_object != ptr ) {

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

->RandomOrder();

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

BEGIN_NAMED_BASE_CLASS_INFO("Seq-align", CSeq_align)

BEGIN_NAMED_CHOICE_INFO("", CSeq_align_Base::C_Segs)

BEGIN_NAMED_ENUM_IN_INFO("", CSeq_align_Base::, EType, false)

User-defined methods of the data storage class.

User-defined methods of the data storage class.

#define DIAG_COMPILE_INFO

Make compile time diagnostic information object to use in CNcbiDiag and CException.

#define MEMBER_PTR(MemberName)

#define SET_ENUM_INTERNAL_NAME(OwnerName, MemberName)

#define ADD_NAMED_MEMBER(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)

#define SET_ENUM_MODULE(ModuleName)

#define ADD_NAMED_REF_CHOICE_VARIANT(MemberAlias, MemberName, ClassName)

#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)

#define SET_CLASS_MODULE(ModuleName)

#define ADD_NAMED_ENUM_MEMBER(MemberAlias, MemberName, EnumName)

#define ADD_ENUM_VALUE(EnumValueName, EnumValueValue)

#define SET_INTERNAL_NAME(OwnerName, MemberName)

#define SET_CHOICE_MODULE(ModuleName)

#define ADD_NAMED_BUF_CHOICE_VARIANT(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

void AddReference(void) const

Add reference to object.

bool IsAllocatedInPool(void) const THROWS_NONE

Check if object is allocated in memory pool (not system heap)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const TDenseg & GetDenseg(void) const

Get the variant data.

TSegs & SetSegs(void)

Assign a value to Segs data member.

TDenseg & SetDenseg(void)

Select the variant.

TPacked & SetPacked(void)

Select the variant.

void ResetExt(void)

Reset Ext data member.

E_Choice

Choice variants.

void ResetSegs(void)

Reset Segs data member.

void ResetDim(void)

Reset Dim data member.

virtual ~CSeq_align_Base(void)

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

void ResetId(void)

Reset Id data member.

list< CRef< CUser_object > > m_Ext

void ResetScore(void)

Reset Score data member.

TSparse & SetSparse(void)

Select the variant.

void Reset(void)

Reset the whole object.

void ResetSelection(void)

Reset the selection (set it to e_not_set).

vector< CRef< CScore > > m_Score

static const char *const sm_SelectionNames[]

const TSpliced & GetSpliced(void) const

Get the variant data.

const TPacked & GetPacked(void) const

Get the variant data.

virtual void Reset(void)

Reset the whole object.

void ResetBounds(void)

Reset Bounds data member.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

TDisc & SetDisc(void)

Select the variant.

TSpliced & SetSpliced(void)

Select the variant.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

const TSparse & GetSparse(void) const

Get the variant data.

const TDisc & GetDisc(void) const

Get the variant data.

list< CRef< CSeq_loc > > m_Bounds

void ResetType(void)

Reset Type data member.

list< CRef< CObject_id > > m_Id

@ e_not_set

No variant selected.

const GenericPointer< typename T::ValueType > T2 value

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