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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Seq__align_8cpp.html below:

NCBI C++ ToolKit: src/objects/seqalign/Seq_align.cpp File Reference

= {

"Blast score",

"Blast score",

"Blast-style bit score",

"Blast-style e-value",

"Length of the aligned segments, including the length of all gap segments",

"Count of identities",

"Count of positives; protein-to-DNA score",

"Count of negatives; protein-to-DNA score",

"Count of mismatches",

"Number of gaps in the alignment",

"Percent identity (0.0-100.0); count each base in a gap in any row as a mismatch",

"Percent identity (0.0-100.0); don't count gaps",

"Percent identity (0.0-100.0); count a gap of any length in any row as a mismatch of length 1",

"Percentage of query sequence aligned to subject (0.0-100.0)",

"Blast-style sum_e",

"Composition-adjustment method from BLAST",

"Percent coverage (0.0-100.0) of high quality region",

"Count of identities",

"Percent identity; count gaps within exons and introns on product",

"Number of splices; 2 x number of introns that have no gap on product",

"Number of splices with consensus splice sequence",

"Percentage of query sequence aligned to subject (0.0-100.0)",

"Percent identity; count gaps within exons only"

}


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