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NCBI C++ ToolKit: src/objects/seqfeat/SeqFeatData_.cpp Source File

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, eSite_oxidative_deamination);

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, eSite_pyrrolidone_carboxylic_acid);

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, eSite_gamma_carboxyglutamic_acid);

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, eSite_transmembrane_region);

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

BEGIN_NAMED_BASE_CHOICE_INFO("SeqFeatData", CSeqFeatData)

BEGIN_NAMED_ENUM_IN_INFO("", CSeqFeatData_Base::, EBond, false)

User-defined methods of the data storage class.

User-defined methods of the data storage class.

@Imp_feat.hpp User-defined methods of the data storage class.

@Pubdesc.hpp User-defined methods of the data storage class.

@RNA_ref.hpp User-defined methods of the data storage class.

#define DIAG_COMPILE_INFO

Make compile time diagnostic information object to use in CNcbiDiag and CException.

#define SET_ENUM_INTERNAL_NAME(OwnerName, MemberName)

#define SET_ENUM_MODULE(ModuleName)

#define ADD_NAMED_REF_CHOICE_VARIANT(MemberAlias, MemberName, ClassName)

#define ADD_ENUM_VALUE(EnumValueName, EnumValueValue)

#define ADD_NAMED_ENUM_CHOICE_VARIANT(MemberAlias, MemberName, EnumName)

#define SET_CHOICE_MODULE(ModuleName)

#define ADD_NAMED_NULL_CHOICE_VARIANT(MemberAlias, TypeMacro, TypeMacroArgs)

#define ADD_NAMED_BUF_CHOICE_VARIANT(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

void AddReference(void) const

Add reference to object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual void Reset(void)

Reset the whole object.

const TClone & GetClone(void) const

Get the variant data.

TOrg & SetOrg(void)

Select the variant.

EPsec_str

protein secondary structure

const TPub & GetPub(void) const

Get the variant data.

TProt & SetProt(void)

Select the variant.

TGene & SetGene(void)

Select the variant.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

const TNum & GetNum(void) const

Get the variant data.

TUser & SetUser(void)

Select the variant.

const TTxinit & GetTxinit(void) const

Get the variant data.

const TSeq & GetSeq(void) const

Get the variant data.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

virtual ~CSeqFeatData_Base(void)

E_Choice

Choice variants.

TClone & SetClone(void)

Select the variant.

TRegion & SetRegion(void)

Select the variant.

TBiosrc & SetBiosrc(void)

Select the variant.

TPub & SetPub(void)

Select the variant.

TTxinit & SetTxinit(void)

Select the variant.

const TUser & GetUser(void) const

Get the variant data.

static const char *const sm_SelectionNames[]

TRna & SetRna(void)

Select the variant.

TImp & SetImp(void)

Select the variant.

const TCdregion & GetCdregion(void) const

Get the variant data.

const TBiosrc & GetBiosrc(void) const

Get the variant data.

const TOrg & GetOrg(void) const

Get the variant data.

const TRsite & GetRsite(void) const

Get the variant data.

const TGene & GetGene(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< THet > m_Het

TSeq & SetSeq(void)

Select the variant.

const TProt & GetProt(void) const

Get the variant data.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

NCBI_NS_NCBI::CSerialObject * m_object

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string > m_string

TRsite & SetRsite(void)

Select the variant.

TCdregion & SetCdregion(void)

Select the variant.

THet & SetHet(void)

Select the variant.

const TRna & GetRna(void) const

Get the variant data.

TVariation & SetVariation(void)

Select the variant.

const TVariation & GetVariation(void) const

Get the variant data.

TNon_std_residue & SetNon_std_residue(void)

Select the variant.

virtual void ResetSelection(void)

Reset the selection (set it to e_not_set).

const TImp & GetImp(void) const

Get the variant data.

TNum & SetNum(void)

Select the variant.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

@ e_Het

cofactor, prosthetic grp, etc, bound to seq

@ e_not_set

No variant selected.

@ e_Region

named region (globin locus)

@ e_Seq

to annotate origin from another seq

@ e_Txinit

transcription initiation

@ e_Num

a numbering system

@ e_Pub

publication applies to this seq

@ e_User

user defined structure

@ e_Rsite

restriction site (for maps really)

@ e_Non_std_residue

non-standard residue here in seq

const GenericPointer< typename T::ValueType > T2 value

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