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NCBI C++ ToolKit: include/objects/seqedit/SeqEdit_Cmd_AddAnnot_.hpp Source File

41 #ifndef OBJECTS_SEQEDIT_SEQEDIT_CMD_ADDANNOT_BASE_HPP 42 #define OBJECTS_SEQEDIT_SEQEDIT_CMD_ADDANNOT_BASE_HPP 52 #ifndef BEGIN_objects_SCOPE 53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 54 # define END_objects_SCOPE END_SCOPE(objects) 146  void

ResetSelection(

void

);

158  void

CheckSelected(

E_Choice

index)

const

;

164 

NCBI_NORETURN

void

ThrowInvalidSelection(

E_Choice

index)

const

;

172  static string

SelectionName(

E_Choice

index);

204  bool

IsFeat(

void

)

const

;

210  const TFeat

& GetFeat(

void

)

const

;

216  TFeat

& SetFeat(

void

);

230  bool

IsAlign(

void

)

const

;

236  const TAlign

& GetAlign(

void

)

const

;

242  TAlign

& SetAlign(

void

);

256  bool

IsGraph(

void

)

const

;

262  const TGraph

& GetGraph(

void

)

const

;

268  TGraph

& SetGraph(

void

);

285  static const char

*

const

sm_SelectionNames[];

305  void

ResetSelection(

void

);

311 

E_Choice Which(

void

)

const

;

317  void

CheckSelected(E_Choice index)

const

;

323 

NCBI_NORETURN

void

ThrowInvalidSelection(E_Choice index)

const

;

331  static string

SelectionName(E_Choice index);

362  bool

IsDescr(

void

)

const

;

368  const TDescr

& GetDescr(

void

)

const

;

374  TDescr

& SetDescr(

void

);

388  bool

IsObj(

void

)

const

;

394  const TObj

& GetObj(

void

)

const

;

400  TObj

& SetObj(

void

);

417  static const char

*

const

sm_SelectionNames[];

456  void

ResetSelection(

void

);

462 

E_Choice Which(

void

)

const

;

468  void

CheckSelected(E_Choice index)

const

;

474 

NCBI_NORETURN

void

ThrowInvalidSelection(E_Choice index)

const

;

482  static string

SelectionName(E_Choice index);

514  bool

IsFeat(

void

)

const

;

520  const TFeat

& GetFeat(

void

)

const

;

526  TFeat

& SetFeat(

void

);

540  bool

IsAlign(

void

)

const

;

546  const TAlign

& GetAlign(

void

)

const

;

552  TAlign

& SetAlign(

void

);

566  bool

IsGraph(

void

)

const

;

572  const TGraph

& GetGraph(

void

)

const

;

578  TGraph

& SetGraph(

void

);

595  static const char

*

const

sm_SelectionNames[];

628  bool

IsSetId(

void

)

const

;

635  bool

CanGetId(

void

)

const

;

638  void

ResetId(

void

);

666  bool

IsSetName(

void

)

const

;

673  bool

CanGetName(

void

)

const

;

676  void

ResetName(

void

);

682  const TName

& GetName(

void

)

const

;

695  TName

& SetName(

void

);

705  bool

IsSetNamed(

void

)

const

;

712  bool

CanGetNamed(

void

)

const

;

715  void

ResetNamed(

void

);

721  TNamed

GetNamed(

void

)

const

;

733  TNamed

& SetNamed(

void

);

742  bool

IsSetSearch_param(

void

)

const

;

749  bool

CanGetSearch_param(

void

)

const

;

752  void

ResetSearch_param(

void

);

779  bool

IsSetData(

void

)

const

;

786  bool

CanGetData(

void

)

const

;

789  void

ResetData(

void

);

795  const TData

& GetData(

void

)

const

;

807  TData

& SetData(

void

);

810  virtual void

Reset(

void

);

974  return m_Id

.NotEmpty();

1032  m_Name

= std::forward<CSeqEdit_Cmd_AddAnnot_Base::TName>(

value

);

an annotaion object to add

use an annotaion descriptor,

Add an annotaion object to a bioseq or a bioseq-set.

namespace ncbi::objects::

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

static string UnassignedString(void)

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

bool NotEmpty(void) const THROWS_NONE

Check if CRef is not empty – pointing to an object and has a non-null value.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQEDIT_EXPORT

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

DECLARE_INTERNAL_TYPE_INFO()

bool IsFeat(void) const

Check if variant Feat is selected.

CSeqEdit_Cmd_AddAnnot_Base(const CSeqEdit_Cmd_AddAnnot_Base &)

bool IsAlign(void) const

Check if variant Align is selected.

E_Choice Which(void) const

Which variant is currently selected.

NCBI_NS_NCBI::CSerialObject * m_object

CRef< TSearch_param > m_Search_param

bool CanGetName(void) const

Check if it is safe to call GetName method.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

C_Search_param TSearch_param

TNamed & SetNamed(void)

Assign a value to Named data member.

const TId & GetId(void) const

Get the Id member data.

bool CanGetSearch_param(void) const

Check if it is safe to call GetSearch_param method.

bool CanGetNamed(void) const

Check if it is safe to call GetNamed method.

bool IsGraph(void) const

Check if variant Graph is selected.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

bool IsAlign(void) const

Check if variant Align is selected.

void ResetData(void)

Reset Data data member.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

void ResetSelection(void)

Reset the selection (set it to e_not_set).

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

bool IsObj(void) const

Check if variant Obj is selected.

TData & SetData(void)

Assign a value to Data data member.

bool IsGraph(void) const

Check if variant Graph is selected.

C_Search_param(const C_Search_param &)

bool IsSetData(void) const

Check if a value has been assigned to Data data member.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

bool CanGetId(void) const

Check if it is safe to call GetId method.

void ResetId(void)

Reset Id data member.

bool IsSetSearch_param(void) const

Check if a value has been assigned to Search_param data member.

bool IsFeat(void) const

Check if variant Feat is selected.

bool IsSetId(void) const

Bioseq or Bioseq_set id Check if a value has been assigned to Id data member.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

C_Search_param & operator=(const C_Search_param &)

NCBI_NS_NCBI::CSerialObject * m_object

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

E_Choice

Choice variants.

E_Choice

Choice variants.

E_Choice Which(void) const

Which variant is currently selected.

void ResetNamed(void)

Reset Named data member.

Tparent::CMemberIndex< E_memberIndex, 6 > TmemberIndex

bool IsSetNamed(void) const

TRUE if an annotation is named Check if a value has been assigned to Named data member.

DECLARE_INTERNAL_TYPE_INFO()

E_Choice

Choice variants.

C_Data & operator=(const C_Data &)

TNamed GetNamed(void) const

Get the Named member data.

bool IsSetName(void) const

Annotation's name Check if a value has been assigned to Name data member.

bool CanGetData(void) const

Check if it is safe to call GetData method.

DECLARE_INTERNAL_TYPE_INFO()

TName & SetName(void)

Assign a value to Name data member.

bool IsDescr(void) const

Check if variant Descr is selected.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

NCBI_NS_NCBI::CSerialObject * m_object

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

CSeqEdit_Cmd_AddAnnot_Base & operator=(const CSeqEdit_Cmd_AddAnnot_Base &)

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

const TData & GetData(void) const

Get the Data member data.

E_Choice Which(void) const

Which variant is currently selected.

TId & SetId(void)

Assign a value to Id data member.

const TSearch_param & GetSearch_param(void) const

Get the Search_param member data.

const TName & GetName(void) const

Get the Name member data.

C_Obj & operator=(const C_Obj &)

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

DECLARE_INTERNAL_TYPE_INFO()

@ e_Feat

otherwise use an annot object

@ e_not_set

No variant selected.

@ e_Descr

If an annotation does not have any objects,.

const GenericPointer< typename T::ValueType > T2 value


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