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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Search__summary___8hpp_source.html below:

NCBI C++ ToolKit: include/algo/ms/formats/pepxml/Search_summary_.hpp Source File

eAttlist_precursor_mass_type_monoisotopic = 1,

eAttlist_precursor_mass_type_average = 2

eAttlist_fragment_mass_type_monoisotopic = 1,

eAttlist_fragment_mass_type_average = 2

e_precursor_mass_type,

e_fragment_mass_type,

IsSetBase_name(

)

;

CanGetBase_name(

)

;

ResetBase_name(

);

& GetBase_name(

)

;

IsSetSearch_engine(

)

;

CanGetSearch_engine(

)

;

ResetSearch_engine(

);

IsSetPrecursor_mass_type(

)

;

CanGetPrecursor_mass_type(

)

;

ResetPrecursor_mass_type(

);

IsSetFragment_mass_type(

)

;

CanGetFragment_mass_type(

)

;

ResetFragment_mass_type(

);

IsSetOut_data_type(

)

;

CanGetOut_data_type(

)

;

ResetOut_data_type(

);

IsSetOut_data(

)

;

CanGetOut_data(

)

;

ResetOut_data(

);

& GetOut_data(

)

;

IsSetSearch_id(

)

;

CanGetSearch_id(

)

;

ResetSearch_id(

);

e_enzymatic_search_constraint,

e_sequence_search_constraint,

e_aminoacid_modification,

e_terminal_modification,

IsSetAttlist(

)

;

CanGetAttlist(

)

;

ResetAttlist(

);

& GetAttlist(

)

;

IsSetSearch_database(

)

;

CanGetSearch_database(

)

;

ResetSearch_database(

);

IsSetEnzymatic_search_constraint(

)

;

CanGetEnzymatic_search_constraint(

)

;

ResetEnzymatic_search_constraint(

);

IsSetSequence_search_constraint(

)

;

CanGetSequence_search_constraint(

)

;

ResetSequence_search_constraint(

);

IsSetAminoacid_modification(

)

;

CanGetAminoacid_modification(

)

;

ResetAminoacid_modification(

);

IsSetTerminal_modification(

)

;

CanGetTerminal_modification(

)

;

ResetTerminal_modification(

);

IsSetParameter(

)

;

CanGetParameter(

)

;

ResetParameter(

);

& GetParameter(

)

;

Reset(

);

IsSetBase_name();

(!CanGetBase_name()) {

m_Base_name =

;

m_Base_name = std::forward<CSearch_summary_Base::C_Attlist::TBase_name>(

);

(!IsSetBase_name()) {

IsSetSearch_engine();

(!CanGetSearch_engine()) {

m_Search_engine;

m_Search_engine =

;

m_Search_engine = std::forward<CSearch_summary_Base::C_Attlist::TSearch_engine>(

);

(!IsSetSearch_engine()) {

m_Search_engine;

IsSetPrecursor_mass_type();

(!CanGetPrecursor_mass_type()) {

m_Precursor_mass_type;

m_Precursor_mass_type =

;

(!IsSetPrecursor_mass_type()) {

memset(&m_Precursor_mass_type,

(),

(m_Precursor_mass_type));

m_Precursor_mass_type;

IsSetFragment_mass_type();

(!CanGetFragment_mass_type()) {

m_Fragment_mass_type;

m_Fragment_mass_type =

;

(!IsSetFragment_mass_type()) {

memset(&m_Fragment_mass_type,

(),

(m_Fragment_mass_type));

m_Fragment_mass_type;

IsSetOut_data_type();

(!CanGetOut_data_type()) {

m_Out_data_type;

m_Out_data_type =

;

m_Out_data_type = std::forward<CSearch_summary_Base::C_Attlist::TOut_data_type>(

);

(!IsSetOut_data_type()) {

m_Out_data_type;

IsSetOut_data();

(!CanGetOut_data()) {

m_Out_data = std::forward<CSearch_summary_Base::C_Attlist::TOut_data>(

);

(!IsSetOut_data()) {

IsSetSearch_id();

(!CanGetSearch_id()) {

m_Search_id =

;

(!IsSetSearch_id()) {

CAminoacid_modification –.

CEnzymatic_search_constraint –.

Database search settings.

CSequence_search_constraint –.

Base class for all serializable objects.

CTerminal_modification –.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_PEPXML_EXPORT

bool IsSetSearch_id(void) const

Check if a value has been assigned to Search_id data member.

void ResetSearch_id(void)

Reset Search_id data member.

bool CanGetSequence_search_constraint(void) const

Check if it is safe to call GetSequence_search_constraint method.

CSearch_database TSearch_database

const TOut_data_type & GetOut_data_type(void) const

Get the Out_data_type member data.

bool CanGetSearch_database(void) const

Check if value of Search_database member is getatable.

bool CanGetTerminal_modification(void) const

Check if it is safe to call GetTerminal_modification method.

EAttlist_fragment_mass_type

TAttlist & SetAttlist(void)

Assign a value to Attlist data member.

TOut_data_type & SetOut_data_type(void)

Assign a value to Out_data_type data member.

EAttlist_precursor_mass_type

C_Attlist & operator=(const C_Attlist &)

bool CanGetPrecursor_mass_type(void) const

Check if it is safe to call GetPrecursor_mass_type method.

bool IsSetBase_name(void) const

mass_types are (monoisotopic | average) Check if a value has been assigned to Base_name data member.

CRef< TSearch_database > m_Search_database

bool IsSetParameter(void) const

Check if a value has been assigned to Parameter data member.

TSearch_engine & SetSearch_engine(void)

Assign a value to Search_engine data member.

bool CanGetParameter(void) const

Check if it is safe to call GetParameter method.

list< CRef< CParameter > > m_Parameter

list< CRef< CAminoacid_modification > > m_Aminoacid_modification

Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex

const TOut_data & GetOut_data(void) const

Get the Out_data member data.

const TParameter & GetParameter(void) const

Get the Parameter member data.

bool IsSetAminoacid_modification(void) const

Check if a value has been assigned to Aminoacid_modification data member.

bool CanGetBase_name(void) const

Check if it is safe to call GetBase_name method.

EAttlist_fragment_mass_type m_Fragment_mass_type

bool CanGetAminoacid_modification(void) const

Check if it is safe to call GetAminoacid_modification method.

list< CRef< CTerminal_modification > > m_Terminal_modification

TSequence_search_constraint & SetSequence_search_constraint(void)

Assign a value to Sequence_search_constraint data member.

list< CRef< CSequence_search_constraint > > TSequence_search_constraint

bool IsSetOut_data_type(void) const

Check if a value has been assigned to Out_data_type data member.

list< CRef< CAminoacid_modification > > TAminoacid_modification

void ResetAttlist(void)

Reset Attlist data member.

CRef< TAttlist > m_Attlist

TFragment_mass_type & SetFragment_mass_type(void)

Assign a value to Fragment_mass_type data member.

const TBase_name & GetBase_name(void) const

Get the Base_name member data.

EAttlist_precursor_mass_type m_Precursor_mass_type

const TSearch_database & GetSearch_database(void) const

Get the Search_database member data.

bool CanGetSearch_engine(void) const

Check if it is safe to call GetSearch_engine method.

Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex

bool CanGetEnzymatic_search_constraint(void) const

Check if value of Enzymatic_search_constraint member is getatable.

bool IsSetSearch_engine(void) const

Check if a value has been assigned to Search_engine data member.

bool CanGetAttlist(void) const

Check if it is safe to call GetAttlist method.

DECLARE_INTERNAL_TYPE_INFO()

DECLARE_INTERNAL_TYPE_INFO()

const TTerminal_modification & GetTerminal_modification(void) const

Get the Terminal_modification member data.

void ResetFragment_mass_type(void)

Reset Fragment_mass_type data member.

CEnzymatic_search_constraint TEnzymatic_search_constraint

bool CanGetOut_data_type(void) const

Check if it is safe to call GetOut_data_type method.

CRef< TEnzymatic_search_constraint > m_Enzymatic_search_constraint

list< CRef< CParameter > > TParameter

CSearch_summary_Base & operator=(const CSearch_summary_Base &)

C_Attlist(const C_Attlist &)

const TSearch_engine & GetSearch_engine(void) const

Get the Search_engine member data.

TBase_name & SetBase_name(void)

Assign a value to Base_name data member.

bool IsSetTerminal_modification(void) const

Check if a value has been assigned to Terminal_modification data member.

TSearch_id GetSearch_id(void) const

Get the Search_id member data.

const TAttlist & GetAttlist(void) const

Get the Attlist member data.

TOut_data & SetOut_data(void)

Assign a value to Out_data data member.

EAttlist_fragment_mass_type TFragment_mass_type

TTerminal_modification & SetTerminal_modification(void)

Assign a value to Terminal_modification data member.

bool CanGetOut_data(void) const

Check if it is safe to call GetOut_data method.

TPrecursor_mass_type GetPrecursor_mass_type(void) const

Get the Precursor_mass_type member data.

EAttlist_precursor_mass_type TPrecursor_mass_type

TSearch_id & SetSearch_id(void)

Assign a value to Search_id data member.

void ResetPrecursor_mass_type(void)

Reset Precursor_mass_type data member.

bool IsSetSequence_search_constraint(void) const

Check if a value has been assigned to Sequence_search_constraint data member.

TParameter & SetParameter(void)

Assign a value to Parameter data member.

TPrecursor_mass_type & SetPrecursor_mass_type(void)

Assign a value to Precursor_mass_type data member.

TFragment_mass_type GetFragment_mass_type(void) const

Get the Fragment_mass_type member data.

bool IsSetOut_data(void) const

Check if a value has been assigned to Out_data data member.

const TSequence_search_constraint & GetSequence_search_constraint(void) const

Get the Sequence_search_constraint member data.

list< CRef< CSequence_search_constraint > > m_Sequence_search_constraint

bool IsSetPrecursor_mass_type(void) const

Check if a value has been assigned to Precursor_mass_type data member.

bool IsSetAttlist(void) const

Check if a value has been assigned to Attlist data member.

TAminoacid_modification & SetAminoacid_modification(void)

Assign a value to Aminoacid_modification data member.

bool CanGetFragment_mass_type(void) const

Check if it is safe to call GetFragment_mass_type method.

CSearch_summary_Base(const CSearch_summary_Base &)

bool IsSetFragment_mass_type(void) const

Check if a value has been assigned to Fragment_mass_type data member.

bool CanGetSearch_id(void) const

Check if it is safe to call GetSearch_id method.

const TEnzymatic_search_constraint & GetEnzymatic_search_constraint(void) const

Get the Enzymatic_search_constraint member data.

const TAminoacid_modification & GetAminoacid_modification(void) const

Get the Aminoacid_modification member data.

list< CRef< CTerminal_modification > > TTerminal_modification

const GenericPointer< typename T::ValueType > T2 value

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