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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/RNA__ref___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seqfeat/RNA_ref_.hpp Source File

41 #ifndef OBJECTS_SEQFEAT_RNA_REF_BASE_HPP 42 #define OBJECTS_SEQFEAT_RNA_REF_BASE_HPP 52 #ifndef BEGIN_objects_SCOPE 53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 54 # define END_objects_SCOPE END_SCOPE(objects) 147  void

ResetSelection(

void

);

153 

E_Choice Which(

void

)

const

;

159  void

CheckSelected(E_Choice index)

const

;

165 

NCBI_NORETURN

void

ThrowInvalidSelection(E_Choice index)

const

;

173  static string

SelectionName(E_Choice index);

205  bool

IsName(

void

)

const

;

211  const TName

& GetName(

void

)

const

;

217  TName

& SetName(

void

);

232  bool

IsTRNA(

void

)

const

;

238  const TTRNA

& GetTRNA(

void

)

const

;

244  TTRNA

& SetTRNA(

void

);

258  bool

IsGen(

void

)

const

;

264  const TGen

& GetGen(

void

)

const

;

270  TGen

& SetGen(

void

);

287  static const char

*

const

sm_SelectionNames[];

290

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string>

m_string

;

318  bool

IsSetType(

void

)

const

;

325  bool

CanGetType(

void

)

const

;

328  void

ResetType(

void

);

334  TType

GetType(

void

)

const

;

346  TType

& SetType(

void

);

355  bool

IsSetPseudo(

void

)

const

;

362  bool

CanGetPseudo(

void

)

const

;

365  void

ResetPseudo(

void

);

371  TPseudo

GetPseudo(

void

)

const

;

393  bool

IsSetExt(

void

)

const

;

400  bool

CanGetExt(

void

)

const

;

403  void

ResetExt(

void

);

409  const TExt

& GetExt(

void

)

const

;

421  TExt

& SetExt(

void

);

424  virtual void

Reset(

void

);

457  if

( m_choice != index )

458

ThrowInvalidSelection(index);

467

DoSelect(index, pool);

474

Select(index, reset, 0);

480  return

m_choice == e_Name;

486

CheckSelected(e_Name);

500  return

m_choice == e_TRNA;

506  return

m_choice == e_Gen;

606  return m_Ext

.NotEmpty();

*** rnas *********************************************** * * various rnas * minimal RNA sequence

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQFEAT_EXPORT

E_Choice

Choice variants.

CRNA_ref_Base(const CRNA_ref_Base &)

TName & SetName(void)

Select the variant.

C_Ext & operator=(const C_Ext &)

CRNA_ref_Base & operator=(const CRNA_ref_Base &)

TType GetType(void) const

Get the Type member data.

E_Choice Which(void) const

Which variant is currently selected.

bool IsTRNA(void) const

Check if variant TRNA is selected.

DECLARE_INTERNAL_TYPE_INFO()

Tparent::CMemberIndex< E_memberIndex, 4 > TmemberIndex

EType

type of RNA feature

bool IsSetExt(void) const

generic fields for ncRNA, tmRNA, miscRNA Check if a value has been assigned to Ext data member.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

bool IsGen(void) const

Check if variant Gen is selected.

DECLARE_INTERNAL_TYPE_INFO()

TType & SetType(void)

Assign a value to Type data member.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

bool CanGetExt(void) const

Check if it is safe to call GetExt method.

void ResetType(void)

Reset Type data member.

TPseudo & SetPseudo(void)

Assign a value to Pseudo data member.

TPseudo GetPseudo(void) const

Get the Pseudo member data.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

bool CanGetType(void) const

Check if it is safe to call GetType method.

bool IsSetType(void) const

Check if a value has been assigned to Type data member.

const TName & GetName(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string > m_string

NCBI_NS_NCBI::CSerialObject * m_object

bool IsSetPseudo(void) const

Check if a value has been assigned to Pseudo data member.

void ResetPseudo(void)

Reset Pseudo data member.

bool CanGetPseudo(void) const

Check if it is safe to call GetPseudo method.

const TExt & GetExt(void) const

Get the Ext member data.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

bool IsName(void) const

Check if variant Name is selected.

@ e_Name

for naming "other" type

const GenericPointer< typename T::ValueType > T2 value


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