<
typenameStringT>
77 static const auto& s_Facet = get_ctype_facet<typename StringT::value_type>(
locale());
78 for(
auto& cch :
str) {
79cch = s_Facet.tolower(cch);
84 template<
typenameStringT>
86 static const auto& s_Facet = get_ctype_facet<typename StringT::value_type>(
locale());
87 for(
auto& cch :
str) {
88cch = s_Facet.toupper(cch);
95 static const auto& s_Facet = get_ctype_facet<char>();
97 if(!all_of(
str.begin(),
str.end(), [](
charcch) ->
bool{ return s_Facet.is(ctype_base::digit, cch); }))
109 typedefinitializer_list<pair<int, const char*>> int_string_map;
110 static constint_string_map s_MonthTable = {
111{ 1,
"Jan"}, { 1,
"January"},
112{ 2,
"Feb"}, { 2,
"February"},
113{ 3,
"Mar"}, { 3,
"March"},
114{ 4,
"Apr"}, { 4,
"April"},
115{ 5,
"May"}, { 5,
"May"},
116{ 6,
"Jun"}, { 6,
"June"},
117{ 7,
"Jul"}, { 7,
"July"},
118{ 8,
"Aug"}, { 8,
"August"},
119{ 9,
"Sep"}, { 9,
"September"},
120{ 10,
"Oct"}, { 10,
"October"},
121{ 11,
"Nov"}, { 11,
"November"},
122{ 12,
"Dec"}, { 12,
"December"}
125 if(month_str.empty())
return0;
128 autop = find_if(s_MonthTable.begin(), s_MonthTable.end(),
129[&month_str](
constpair<int, const char*>& x) ->
bool{ return NStr::EqualNocase(month_str, x.second); });
130 returnp == s_MonthTable.end() ? 0 : p->first;
134 template<
classcontainer_type,
classcheck_type,
classproc_type>
137 auto first= begin(container);
138 while(
first!= end(container))
142 autop = find_if_not(
first+ 1, end(container),
f);
174vector<string> tokens;
176[&tokens](string::iterator p, string::iterator q) -> string::iterator {
178 if(!s.empty() && s !=
"D'"&& s !=
"DE"&& s !=
"DER"&& s !=
"LA"&& s !=
"IBN")
182 if(tokens.size() >= 2) {
185 returnaccumulate(tokens.begin(), tokens.end(),
string(),
186[](
const string& x,
const string& y) { return x + y.substr(0, 1); });
188 else if(tokens.size() == 1) {
189 autop = find(tokens.front().begin(), tokens.front().end(),
'-');
190 if(p != tokens.front().end() && p + 1 != tokens.front().end())
191 returntokens.front().substr(0, 1) +
string(1, p[1]);
193 returntokens.front().substr(0, 1);
209 static const auto& s_Facet = get_ctype_facet<char>();
211 if(pub_date.
IsYM()) {
212 auto& ym = pub_date.
GetYM();
213pubmed_date.
_year= NStr::StringToNumeric<int>(ym.GetYear().Get());
215 if(ym.GetMS().IsMD()) {
216 auto& md = ym.GetMS().GetMD();
218 if(pubmed_date.
_month>= 1 && pubmed_date.
_month<= 12 && md.IsSetDay()) {
219pubmed_date.
_day= NStr::StringToNumeric<int>(md.GetDay().Get());
222 else if(ym.GetMS().IsSeason()) {
223 auto& season = ym.GetMS().GetSeason().Get();
224 autopos = season.find(
'-');
247 s_ForeachToken(medline_date, [](
charcch) ->
bool{
returns_Facet.is(ctype_base::alnum, cch); },
248[&pubmed_date](string::iterator p, string::iterator q) -> string::iterator {
252 if(pubmed_date.
_year== 0 && num >= 1800 && num <= 2100)
253pubmed_date.
_year= num;
254 else if(pubmed_date.
_month== 0 && num >= 1 && num <= 12)
255pubmed_date.
_month= num;
256 else if(pubmed_date.
_month!= 0 && pubmed_date.
_day== 0 && num >= 1 && num <= 31)
257pubmed_date.
_day= num;
259 else if(pubmed_date.
_month== 0) {
278std_date.
SetYear(NStr::StringToNumeric<CDate_std::TYear>(adate.
GetYear().
Get()));
280std_date.
SetDay(NStr::StringToNumeric<CDate_std::TDay>(adate.
GetDay().
Get()));
284 stringstr_date = adate.
GetYear();
286 if(!adate.
GetDay().
Get().empty()) str_date +=
" "+ adate.
GetDay();
299 if(
journal.IsSetISOAbbreviation()) {
301iso->SetIso_jta(
journal.GetISOAbbreviation());
302title->
Set().push_back(iso);
307title->
Set().push_back(mljta);
311issn->SetIssn(
journal.GetISSN());
312title->
Set().push_back(issn);
317name->SetName(
journal.GetTitle());
318title->
Set().push_back(name);
329 const string& ref_type)
332 stringattr_ref_type = CCommentsCorrections::C_Attlist::GetTypeInfo_enum_EAttlist_RefType()->
333FindName(ref->GetAttlist().GetRefType(),
false);
334 if(attr_ref_type == ref_type) {
337 if(ref->IsSetNote()) {
338 if(temp.back() !=
'.')
339temp.push_back(
'.');
342 if(ref->IsSetPMID()) {
343 if(temp.back() !=
'.')
344temp.push_back(
'.');
345temp +=
" PMID: "+ ref->GetPMID();
348citretract->
SetExp(temp);
359 static constunordered_map<string, EPubStatus> s_PubStatusId {
373 autop = s_PubStatusId.find(publication_status);
389 stringpub_model = CArticle::C_Attlist::GetTypeInfo_enum_EAttlist_PubModel()->
391 if(pub_model ==
"Electronic-Print"|| pub_model ==
"Electronic-eCollection") {
404 if(!volume.empty()) imprint->
SetVolume(volume);
407 if(!issue.empty()) imprint->
SetIssue(issue);
410 if(!pages.empty()) imprint->
SetPages(pages);
414 if(!list_language.empty())
415languages = accumulate(
next(list_language.begin()), list_language.end(), list_language.front()->Get(),
416[](
const auto& s,
const auto& e) ->
string{ return s +
","+ e->Get(); });
434 stringpub_status = CPubMedPubDate::C_Attlist::GetTypeInfo_enum_EAttlist_PubStatus()->
435FindName(pub_date->GetAttlist().GetPubStatus(),
false);
439pub_stat_date->SetPubstatus(eps);
441date_set->
Set().push_back(pub_stat_date);
472 boolhas_authors = any_of(list_author.begin(), list_author.end(),
473[](
const CRef<CAuthor>& auth)->bool { return s_IsValidYN(*auth); });
475 boolstd_format = any_of(list_author.begin(), list_author.end(), [](
const CRef<CAuthor>& auth)->bool {
476return s_IsValidYN(*auth) && (auth->GetLC().IsCollectiveName() ||
477(auth->IsSetAffiliationInfo() && !auth->GetAffiliationInfo().empty())); });
480 for(
autoauthor : list_author) {
484 if(author->GetLC().IsCollectiveName()) {
486author->GetLC().GetCollectiveName().GetCollectiveName()));
492auth->SetName(*person);
493 auto& list_affiliation_info = author->GetAffiliationInfo();
494 if(!list_affiliation_info.empty()) {
495list<string> affiliations;
496 for(
autoaffiliation_info : list_affiliation_info) {
498 if(!affiliation.empty()) affiliations.emplace_back(std::move(affiliation));
500 if(!affiliations.empty()) {
502affil->
SetStr(accumulate(
next(affiliations.begin()), affiliations.end(), affiliations.front(),
503[](
const string& s1,
const string& s2)->string { return s1 +
"; "+ s2; }));
504auth->SetAffil(*affil);
507auth_names->SetStd().push_back(auth);
518person->
SetMl(
"et al");
520auth->SetName(*person);
521auth_names->SetStd().push_back(auth);
524auth_names->SetMl().push_back(
"et al");
527author_list->
SetNames(*auth_names);
535 static constunordered_map<CArticleId::C_Attlist::EAttlist_IdType, objects::CArticleId::E_Choice> s_ArticleIdTypeId = {
546 autop = s_ArticleIdTypeId.find(id_type);
547 returnp != s_ArticleIdTypeId.end() ? p->second : objects::CArticleId::e_Other;
556 if(title) cit_article->
SetTitle(*title);
558 if(author_list) cit_article->
SetAuthors(*author_list);
571 for(
automesh_heading_it : mesh_heading_list.
GetMeshHeading()) {
573 auto& desc_name = mesh_heading_it->GetDescriptorName();
574 if(desc_name.GetAttlist().IsSetMajorTopicYN() &&
576medline_mesh->SetMp(
true);
577medline_mesh->SetTerm(desc_name.GetDescriptorName());
578 for(
autoqualifier_name_it : mesh_heading_it->GetQualifierName()) {
580 if(qualifier_name_it->GetAttlist().IsSetMajorTopicYN() &&
583qual->SetSubh(qualifier_name_it->GetQualifierName());
584medline_mesh->SetQual().push_back(qual);
586mesh.push_back(medline_mesh);
593 for(
autochemical_it : chemical_list.
GetChemical()) {
595chem->SetName(chemical_it->GetNameOfSubstance());
597 stringregistry_number = chemical_it->GetRegistryNumber();
598 if(registry_number.empty() || registry_number ==
"0")
599chem->SetType(chem->eType_nameonly);
600 else if(registry_number.size() > 2 &&
toupper(registry_number[0]) ==
'E'&&
toupper(registry_number[1]) ==
'C') {
601chem->SetCit(registry_number.c_str() + 2 + strspn(registry_number.c_str() + 2,
" "));
602chem->SetType(chem->eType_ec);
605chem->SetCit(registry_number);
606chem->SetType(chem->eType_cas);
608chems.push_back(chem);
615 static constunordered_map<string, int> s_DatabankTypeId {
631 autop = s_DatabankTypeId.find(databank_name);
632 returnp == s_DatabankTypeId.end() ? -1 : p->second;
638 for(
autodatabank_it : databank_list.
GetDataBank()) {
639 stringdatabank_name = databank_it->GetDataBankName();
643 if(databank_it->IsSetAccessionNumberList()) {
644 for(
auto& accession_number_it : databank_it->GetAccessionNumberList().GetAccessionNumber()) {
647 si->SetCit(accession_number_it->Get());
648refs.push_back(
si);
654refs.push_back(
si);
663 for(
auto& gene_symbol_it : gene_symbol_list.
GetGeneSymbol()) {
664mgenes.push_back(gene_symbol_it->Get());
674pub_types.push_back(publication_type_it->GetPublicationType());
683 for(
autopub_date : pubmed_pubdates) {
684 if(pub_date->GetAttlist().GetPubStatus() == status) {
694 stringabstract_text;
697 string label= abstract_text_it->GetAttlist().IsSetLabel() ?
698abstract_text_it->GetAttlist().GetLabel() +
": ":
"";
699 if(!abstract_text.empty()) abstract_text.append(
" ");
702 returnabstract_text;
722 if(cit.GetArticle().IsSetAbstract())
724 if(cit.IsSetMeshHeadingList())
726 if(cit.IsSetChemicalList())
728 if(cit.GetArticle().IsSetDataBankList())
730 if(cit.GetArticle().IsSetGrantList())
732 if(cit.IsSetGeneSymbolList())
746 returnmedline_entry;
755 for(
char& cch :
str) {
756 if(cch ==
'\r'|| cch ==
'\n'|| cch ==
'\t')
765 static const char* s_SeasonTab[] = {
"Winter",
"Spring",
"Summer",
"Autumn"};
770 if(pm_pub_date.
_month!= 0) {
771 if(pm_pub_date.
_month< 13) {
773 if(pm_pub_date.
_day!= 0)
790std_date.
SetYear(NStr::StringToNumeric<CDate_std::TYear>(pdate.
GetYear().
Get()));
792std_date.
SetDay(NStr::StringToNumeric<CDate_std::TDay>(pdate.
GetDay().
Get()));
796 auto& hm = pdate.
GetHM();
797std_date.
SetHour(NStr::StringToNumeric<CDate_std::THour>(hm.GetHour().Get()));
799 auto&
ms= hm.GetMS();
800std_date.
SetMinute(NStr::StringToNumeric<CDate_std::TMinute>(
ms.GetMinute().Get()));
801 if(
ms.IsSetSecond()) {
802std_date.
SetSecond(NStr::StringToNumeric<CDate_std::TSecond>(
ms.GetSecond().Get()));
811 stringstr_date = pdate.
GetYear();
813 if(!pdate.
GetDay().
Get().empty()) str_date +=
" "+ pdate.
GetDay();
836 if(!title_str.empty() || !vernacular_title_str.empty()) {
838 if(!title_str.empty()) {
840name->SetName(title_str);
841title->
Set().push_back(name);
843 if(!vernacular_title_str.empty()) {
845name->SetTrans(vernacular_title_str);
846title->
Set().push_back(name);
855 stringauthor_medline_name;
858 if(!author_medline_name.empty() && author_medline_name.back() !=
'.')
859author_medline_name.append(
".");
867 if(lfis.IsSetInitials())
869 else if(lfis.IsSetForeName())
871 if(!initials.empty())
872author_medline_name.append(
" "+ initials);
873 if(lfis.IsSetSuffix())
876 returnauthor_medline_name;
883 if(pagination.
IsSEM()) {
884 auto& sem = pagination.
GetSEM();
885 if(sem.IsSetMedlinePgn()) {
889 if(sem.IsSetStartPage()) {
890 if(sem.IsSetEndPage())
returnsem.GetStartPage() +
"-"+ sem.GetEndPage();
891 else returnsem.GetStartPage();
893 if(sem.IsSetEndPage())
return "-"+ sem.GetEndPage();
899 if(pages.empty())
return "";
902 s_ForeachToken(pages, [](
charcch) ->
bool{
returncch !=
','; },
903[&parts](string::iterator p, string::iterator q)->string::iterator {
905x = regex_replace(x, regex(
"\\s+"),
"");
907regex
r(
"^(.*?)-(.*)$");
909regex_search(x, ma,
r);
910 if(ma.empty() || ma.str(1).length() <= ma.str(2).length())
913parts.push_back(ma.str(1) +
"-"+ ma.str(1).substr(0, ma.str(1).length() - ma.str(2).length()) + ma.str(2));
917 returnparts.empty() ?
"": accumulate(
next(parts.begin()), parts.end(), parts.front(),
918[](
const string& s1,
const string& s2)->string { return s1 +
','+ s2; });
925 for(
autoarticle_id_it : article_id_list.
GetArticleId()) {
928 const string& str_id =
utf8_to_string(article_id_it->GetArticleId());
930 caseobjects::CArticleId::e_Pubmed:
931 id->SetPubmed(
CPubMedId(NStr::StringToNumeric<TEntrezId>(str_id)));
933 caseobjects::CArticleId::e_Medline:
935 caseobjects::CArticleId::e_Doi:
936 id->SetDoi(
CDOI(str_id));
938 caseobjects::CArticleId::e_Pii:
939 id->SetPii(
CPII(str_id));
941 caseobjects::CArticleId::e_Pmcid:
942 id->SetPmcid(
CPmcID(NStr::StringToNumeric<TEntrezId>(str_id)));
944 caseobjects::CArticleId::e_Pmcpid:
945 id->SetPmcpid(
CPmcPid(str_id));
947 caseobjects::CArticleId::e_Pmpid:
948 id->SetPmpid(
CPmPid(str_id));
950 caseobjects::CArticleId::e_Other: {
951 stringdb = CArticleId::C_Attlist::GetTypeInfo_enum_EAttlist_IdType()->
952FindName(article_id_it->GetAttlist().GetIdType(),
false);
957db_tag->
SetTag(*obj_id);
958 id->SetOther(*db_tag);
964id_set->
Set().push_back(
id);
970 constlist<CRef<CELocationID>>* eloc_ids =
nullptr;
978 for(
autoelocation_id_it : *eloc_ids) {
979 stringstr_eid_type = CELocationID::C_Attlist::GetTypeInfo_enum_EAttlist_EIdType()->
980FindName(elocation_id_it->GetAttlist().GetEIdType(),
false);
981 string type=
"ELocationID "+ str_eid_type;
982 string value= elocation_id_it->GetELocationID();
988db_tag->
SetTag(*obj_id);
989 id->SetOther(*db_tag);
990id_set->
Set().push_back(
id);
1000 for(
autogrant_it : grant_list.
GetGrant()) {
1002 if(grant_it->IsSetGrantID())
1004 if(grant_it->IsSetAcronym())
1006 if(grant_it->IsSetAgency() && !grant_it->GetAgency().Get().empty())
1010id_nums.push_back(id2);
1019pubmed_entry->SetPmid(
CPubMedId(NStr::StringToNumeric<TEntrezId>(
1022 returnpubmed_entry;
#define BEGIN_eutils_SCOPE
string s_GetVernacularTitleStr(const CVernacularTitle &vernacular_title)
string s_GetArticleTitleStr(const CArticleTitle &article_title)
static void s_FillPubtypeList(CMedline_entry::TPub_type &pub_types, const CPublicationTypeList &publication_type_list)
static CRef< CImprint > s_GetImprint(const CPubmedArticle &pubmed_article)
static objects::CArticleId::E_Choice s_GetArticleIdTypeId(const CArticleId &article_id)
void s_ForeachToken(container_type &container, check_type f, proc_type proc)
static string utf8_to_string(const string &str)
static int s_GetDatabankTypeId(const string &databank_name)
static bool s_SetCommentCorrection(CRef< CImprint > &imprint, const CCommentsCorrectionsList &comments_corrections, CCitRetract::EType type, const string &ref_type)
static void s_FillGenes(CMedline_entry::TGene &mgenes, const CGeneSymbolList &gene_symbol_list)
static string s_GetInitialsFromForeName(string fore_name)
static bool s_StringToInt(const string &str, int &i)
static CRef< CMedline_entry > s_GetMedlineEntry(const CPubmedArticle &pubmed_article)
bool s_IsValidYN(const CAuthor &auth)
static pubmed_date_t s_GetPubmedDate(const CPubDate &pub_date)
void s_FillGrants(list< string > &id_nums, const CGrantList &grant_list)
static int s_TranslateMonth(const string &month_str)
string s_GetAuthorMedlineName(const CAuthor &author)
static void s_FillChem(CMedline_entry::TSubstance &chems, const CChemicalList &chemical_list)
static CRef< CCit_jour > s_GetJournalCitation(const CPubmedArticle &pubmed_article)
string s_CleanupText(string str)
CRef< CDate > s_GetDateFromPubMedPubDate(const CPubMedPubDate &pdate)
static CRef< CDate > s_GetDateFromArticleDate(const CArticleDate &adate)
static CRef< CCit_art > s_GetCitation(const CPubmedArticle &pubmed_article)
static CRef< CPubMedPubDate > s_FindPubDateStatus(const list< CRef< CPubMedPubDate >> &pubmed_pubdates, CPubMedPubDate::C_Attlist::EAttlist_PubStatus status)
static CRef< CTitle > s_GetJournalTitle(const CPubmedArticle &pubmed_article)
static string s_GetAbstractText(const CAbstract &abstr)
string s_GetPagination(const CPagination &pagination)
CRef< CTitle > s_MakeTitle(const string &title_str, const string &vernacular_title_str)
CRef< CDate > s_GetDateFromPubDate(const CPubDate &pub_date)
CRef< CArticleIdSet > s_GetArticleIdSet(const CArticleIdList &article_id_list, const CArticle *article)
static CRef< CAuth_list > s_GetAuthorList(const CArticle &article)
static void s_FillXref(CMedline_entry::TXref &refs, const CDataBankList &databank_list)
static EPubStatus s_GetPublicationStatusId(const string &publication_status)
string s_Utf8TextListToString(const list< CRef< TE >> &text_list)
static void s_FillMesh(CMedline_entry::TMesh &mesh, const CMeshHeadingList &mesh_heading_list)
void s_ToLower(StringT &str)
BEGIN_eutils_SCOPE NCBI_USING_NAMESPACE_STD
void s_ToUpper(StringT &str)
User-defined methods of the data storage class.
std::string s_TextListToString(const std::list< ncbi::CRef< TE >> &text_list)
ncbi::CRef< ncbi::objects::CTitle > s_GetTitle(const D &doc)
User-defined methods of the data storage class.
@Affil.hpp User-defined methods of the data storage class.
@Auth_list.hpp User-defined methods of the data storage class.
CPublicationTypeList â.
ncbi::CRef< ncbi::objects::CPubmed_entry > ToPubmed_entry(void) const
static const char si[8][64]
static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)
static DLIST_TYPE *DLIST_NAME() next(DLIST_LIST_TYPE *list, DLIST_TYPE *item)
static const char * str(char *buf, int n)
void Reset(void)
Reset reference object.
static EEncoding GuessEncoding(const CTempString &src)
Guess the encoding of the C/C++ string.
static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)
Convert into UTF8 from a C/C++ string.
static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)
Case-insensitive equality of a substring with another string.
@ fConvErr_NoThrow
Do not throw an exception on error.
static const char label[]
void SetPages(const TPages &value)
Assign a value to Pages data member.
void SetIds(TIds &value)
Assign a value to Ids data member.
void SetTitle(TTitle &value)
Assign a value to Title data member.
void SetRetract(TRetract &value)
Assign a value to Retract data member.
void SetIssue(const TIssue &value)
Assign a value to Issue data member.
void SetFrom(TFrom &value)
Assign a value to From data member.
void SetLanguage(const TLanguage &value)
Assign a value to Language data member.
void SetType(TType value)
Assign a value to Type data member.
void SetAuthors(TAuthors &value)
Assign a value to Authors data member.
TStr & SetStr(void)
Select the variant.
void SetVolume(const TVolume &value)
Assign a value to Volume data member.
void SetNames(TNames &value)
Assign a value to Names data member.
void SetDate(TDate &value)
Assign a value to Date data member.
EPubStatus
Status Dates points of publication.
Tdata & Set(void)
Assign a value to data member.
void SetHistory(THistory &value)
Assign a value to History data member.
void SetPubstatus(TPubstatus value)
Assign a value to Pubstatus data member.
Tdata & Set(void)
Assign a value to data member.
EType
retraction of an entry
void SetExp(const TExp &value)
Assign a value to Exp data member.
Tdata & Set(void)
Assign a value to data member.
@ ePubStatus_pubmed
article citation first appeared in PubMed
@ ePubStatus_accepted
accepted for publication
@ ePubStatus_ppublish
published in print by publisher
@ ePubStatus_premedline
date into PreMedline status
@ ePubStatus_revised
article revised by publisher/author
@ ePubStatus_received
date manuscript received for review
@ ePubStatus_pubmedr
article citation revision in PubMed
@ ePubStatus_aheadofprint
epublish, but will be followed by print
@ ePubStatus_medline
date made a MEDLINE record
@ ePubStatus_epublish
published electronically by publisher
@ ePubStatus_pmc
article first appeared in PubMed Central
@ ePubStatus_pmcr
article revision in PubMed Central
@ eType_retracted
this citation retracted
@ eType_notice
this citation is a retraction notice
@ eType_erratum
this is a published erratum
@ eType_in_error
an erratum was published about this
TMl & SetMl(void)
Select the variant.
void SetSeason(const TSeason &value)
Assign a value to Season data member.
void SetYear(TYear value)
Assign a value to Year data member.
void SetMinute(TMinute value)
Assign a value to Minute data member.
void SetTag(TTag &value)
Assign a value to Tag data member.
void SetHour(THour value)
Assign a value to Hour data member.
void SetMonth(TMonth value)
Assign a value to Month data member.
TStd & SetStd(void)
Select the variant.
void SetDay(TDay value)
Assign a value to Day data member.
TConsortium & SetConsortium(void)
Select the variant.
TStr & SetStr(void)
Select the variant.
void SetSecond(TSecond value)
Assign a value to Second data member.
void SetDb(const TDb &value)
Assign a value to Db data member.
TStr & SetStr(void)
Select the variant.
TGene & SetGene(void)
Assign a value to Gene data member.
void SetEm(TEm &value)
Assign a value to Em data member.
TIdnum & SetIdnum(void)
Assign a value to Idnum data member.
void SetStatus(TStatus value)
Assign a value to Status data member.
void SetCit(TCit &value)
Assign a value to Cit data member.
list< CRef< CMedline_rn > > TSubstance
void SetAbstract(const TAbstract &value)
Assign a value to Abstract data member.
list< CRef< CMedline_si > > TXref
TXref & SetXref(void)
Assign a value to Xref data member.
list< CRef< CMedline_mesh > > TMesh
void SetPmid(const TPmid &value)
Assign a value to Pmid data member.
TPub_type & SetPub_type(void)
Assign a value to Pub_type data member.
TMesh & SetMesh(void)
Assign a value to Mesh data member.
TSubstance & SetSubstance(void)
Assign a value to Substance data member.
@ eStatus_publisher
record as supplied by publisher
@ eStatus_premedline
premedline record
@ eType_carbbank
Carbohydrate Structure Database.
@ eType_psd
Protein Sequence Database (Japan)
@ eType_embl
EMBL Data Library.
@ eType_swissprot
SwissProt.
@ eType_pir
Protein Identification Resource.
@ eType_hdb
Hybridoma Data Bank.
@ eType_hgml
Human Gene Map Library.
@ eType_pdb
Protein Data Bank (Brookhaven)
@ eType_ddbj
DNA Data Bank of Japan.
@ eType_msd
Microbial Strains Database.
@ eType_mim
Mendelian Inheritance in Man.
@ eType_prfseqdb
Protein Research Foundation (Japan)
@ eType_gdb
Genome Data Base.
bool IsCollectiveName(void) const
Check if variant CollectiveName is selected.
TValidYN GetValidYN(void) const
Get the ValidYN member data.
bool IsELocationID(void) const
Check if variant ELocationID is selected.
const TCollectiveName & GetCollectiveName(void) const
Get the CollectiveName member data.
const TELocationID & GetELocationID(void) const
Get the variant data.
const TAuthorList & GetAuthorList(void) const
Get the AuthorList member data.
const TArticleDate & GetArticleDate(void) const
Get the ArticleDate member data.
const TLanguage & GetLanguage(void) const
Get the Language member data.
TIdType GetIdType(void) const
Get the IdType member data.
const TYM & GetYM(void) const
Get the variant data.
const TPE & GetPE(void) const
Get the variant data.
const TYear & GetYear(void) const
Get the Year member data.
const TMeshHeading & GetMeshHeading(void) const
Get the MeshHeading member data.
const TDay & GetDay(void) const
Get the Day member data.
const TPublicationType & GetPublicationType(void) const
Get the PublicationType member data.
const TMedlineCitation & GetMedlineCitation(void) const
Get the MedlineCitation member data.
const TChemical & GetChemical(void) const
Get the Chemical member data.
bool IsSetVolume(void) const
Check if a value has been assigned to Volume data member.
const THM & GetHM(void) const
Get the HM member data.
TPubModel GetPubModel(void) const
Get the PubModel member data.
const TPubmedData & GetPubmedData(void) const
Get the PubmedData member data.
bool IsSetArticleTitle(void) const
Check if a value has been assigned to ArticleTitle data member.
const Tdata & Get(void) const
Get the member data.
const TMedlinePgn & GetMedlinePgn(void) const
Get the variant data.
const TGrant & GetGrant(void) const
Get the Grant member data.
bool IsLFIS(void) const
Check if variant LFIS is selected.
const TPubDate & GetPubDate(void) const
Get the PubDate member data.
const TArticle & GetArticle(void) const
Get the Article member data.
const TSEM & GetSEM(void) const
Get the variant data.
const TCommentsCorrections & GetCommentsCorrections(void) const
Get the CommentsCorrections member data.
const THistory & GetHistory(void) const
Get the History member data.
bool IsSetAuthorList(void) const
Check if a value has been assigned to AuthorList data member.
const TCommentsCorrectionsList & GetCommentsCorrectionsList(void) const
Get the CommentsCorrectionsList member data.
const TPE_2 & GetPE_2(void) const
Get the PE_2 member data.
bool IsSetCompleteYN(void) const
Check if a value has been assigned to CompleteYN data member.
const TIssue & GetIssue(void) const
Get the Issue member data.
bool IsSetIssue(void) const
Check if a value has been assigned to Issue data member.
const TMonth & GetMonth(void) const
Get the Month member data.
const TCollectiveName & GetCollectiveName(void) const
Get the variant data.
const TAttlist & GetAttlist(void) const
Get the Attlist member data.
const TArticleTitle & GetArticleTitle(void) const
Get the ArticleTitle member data.
bool IsSetELocationID(void) const
Check if a value has been assigned to ELocationID data member.
const TLFIS & GetLFIS(void) const
Get the variant data.
const TELocationID & GetELocationID(void) const
Get the ELocationID member data.
const TPubMedPubDate & GetPubMedPubDate(void) const
Get the PubMedPubDate member data.
bool IsSetValidYN(void) const
Check if a value has been assigned to ValidYN data member.
const TGeneSymbol & GetGeneSymbol(void) const
Get the GeneSymbol member data.
const TPublicationStatus & GetPublicationStatus(void) const
Get the PublicationStatus member data.
const Tdata & Get(void) const
Get the member data.
const TMedlinePgn & GetMedlinePgn(void) const
Get the MedlinePgn member data.
const Tdata & Get(void) const
Get the member data.
bool IsYM(void) const
Check if variant YM is selected.
const TMedlineTA & GetMedlineTA(void) const
Get the MedlineTA member data.
const TAttlist & GetAttlist(void) const
Get the Attlist member data.
const TPagination & GetPagination(void) const
Get the Pagination member data.
const TMedlineJournalInfo & GetMedlineJournalInfo(void) const
Get the MedlineJournalInfo member data.
const TJournal & GetJournal(void) const
Get the Journal member data.
bool IsSetCommentsCorrectionsList(void) const
Check if a value has been assigned to CommentsCorrectionsList data member.
const TDataBank & GetDataBank(void) const
Get the DataBank member data.
const TArticleIdList & GetArticleIdList(void) const
Get the ArticleIdList member data.
TCompleteYN GetCompleteYN(void) const
Get the CompleteYN member data.
bool IsSetIdType(void) const
Check if a value has been assigned to IdType data member.
bool IsSetHM(void) const
Check if a value has been assigned to HM data member.
const Tdata & Get(void) const
Get the member data.
const TArticleId & GetArticleId(void) const
Get the ArticleId member data.
const TAuthor & GetAuthor(void) const
Get the Author member data.
const TMonth & GetMonth(void) const
Get the Month member data.
bool IsMedlinePgn(void) const
Check if variant MedlinePgn is selected.
const TVolume & GetVolume(void) const
Get the Volume member data.
bool IsSetHistory(void) const
Check if a value has been assigned to History data member.
const Tdata & Get(void) const
Get the member data.
const TLC & GetLC(void) const
Get the LC member data.
bool IsMedlineDate(void) const
Check if variant MedlineDate is selected.
bool IsSEM(void) const
Check if variant SEM is selected.
const TAttlist & GetAttlist(void) const
Get the Attlist member data.
const TAttlist & GetAttlist(void) const
Get the Attlist member data.
const TDay & GetDay(void) const
Get the Day member data.
const Tdata & Get(void) const
Get the member data.
bool IsPE(void) const
Check if variant PE is selected.
const TMedlineDate & GetMedlineDate(void) const
Get the variant data.
const TAbstractText & GetAbstractText(void) const
Get the AbstractText member data.
const TYear & GetYear(void) const
Get the Year member data.
@ eAttlist_PubStatus_entrez
@ eAttlist_PubStatus_pubmed
@ eAttlist_DateType_Electronic
@ eAttlist_MajorTopicYN_Y
@ eAttlist_MajorTopicYN_Y
@ eAttlist_Status_Publisher
@ eAttlist_Status_MEDLINE
@ eAttlist_Status_Completed
@ eAttlist_Status_OLDMEDLINE
@ eAttlist_IdType_medline
string UTF8ToAsciiString(const char *src, const SUnicodeTranslation *default_translation, const TUnicodeTable *table=NULL, EConversionResult *result=NULL)
Convert UTF8 into ASCII string.
const GenericPointer< typename T::ValueType > T2 value
double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)
static const char * locale
CRef< CPub > journal(ParserPtr pp, char *bptr, char *eptr, CRef< CAuth_list > &auth_list, CRef< CTitle::C_E > &title, bool has_muid, CRef< CCit_art > &cit_art, Int4 er)
static SLJIT_INLINE sljit_ins ms(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)
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