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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/PubmedArticle_8cpp_source.html below:

NCBI C++ ToolKit: src/objtools/eutils/efetch/PubmedArticle.cpp Source File

42 #include <unordered_map> 75 template

<

typename

StringT>

77  static const auto

& s_Facet = get_ctype_facet<typename StringT::value_type>(

locale

());

78  for

(

auto

& cch :

str

) {

79

cch = s_Facet.tolower(cch);

84 template

<

typename

StringT>

86  static const auto

& s_Facet = get_ctype_facet<typename StringT::value_type>(

locale

());

87  for

(

auto

& cch :

str

) {

88

cch = s_Facet.toupper(cch);

95  static const auto

& s_Facet = get_ctype_facet<char>();

97  if

(!all_of(

str

.begin(),

str

.end(), [](

char

cch) ->

bool

{ return s_Facet.is(ctype_base::digit, cch); }))

109  typedef

initializer_list<pair<int, const char*>> int_string_map;

110  static const

int_string_map s_MonthTable = {

111

{ 1,

"Jan"

}, { 1,

"January"

},

112

{ 2,

"Feb"

}, { 2,

"February"

},

113

{ 3,

"Mar"

}, { 3,

"March"

},

114

{ 4,

"Apr"

}, { 4,

"April"

},

115

{ 5,

"May"

}, { 5,

"May"

},

116

{ 6,

"Jun"

}, { 6,

"June"

},

117

{ 7,

"Jul"

}, { 7,

"July"

},

118

{ 8,

"Aug"

}, { 8,

"August"

},

119

{ 9,

"Sep"

}, { 9,

"September"

},

120

{ 10,

"Oct"

}, { 10,

"October"

},

121

{ 11,

"Nov"

}, { 11,

"November"

},

122

{ 12,

"Dec"

}, { 12,

"December"

}

125  if

(month_str.empty())

return

0;

128  auto

p = find_if(s_MonthTable.begin(), s_MonthTable.end(),

129

[&month_str](

const

pair<int, const char*>& x) ->

bool

{ return NStr::EqualNocase(month_str, x.second); });

130  return

p == s_MonthTable.end() ? 0 : p->first;

134 template

<

class

container_type,

class

check_type,

class

proc_type>

137  auto first

= begin(container);

138  while

(

first

!= end(container))

142  auto

p = find_if_not(

first

+ 1, end(container),

f

);

174

vector<string> tokens;

176

[&tokens](string::iterator p, string::iterator q) -> string::iterator {

178  if

(!s.empty() && s !=

"D'"

&& s !=

"DE"

&& s !=

"DER"

&& s !=

"LA"

&& s !=

"IBN"

)

182  if

(tokens.size() >= 2) {

185  return

accumulate(tokens.begin(), tokens.end(),

string

(),

186

[](

const string

& x,

const string

& y) { return x + y.substr(0, 1); });

188  else if

(tokens.size() == 1) {

189  auto

p = find(tokens.front().begin(), tokens.front().end(),

'-'

);

190  if

(p != tokens.front().end() && p + 1 != tokens.front().end())

191  return

tokens.front().substr(0, 1) +

string

(1, p[1]);

193  return

tokens.front().substr(0, 1);

209  static const auto

& s_Facet = get_ctype_facet<char>();

211  if

(pub_date.

IsYM

()) {

212  auto

& ym = pub_date.

GetYM

();

213

pubmed_date.

_year

= NStr::StringToNumeric<int>(ym.GetYear().Get());

215  if

(ym.GetMS().IsMD()) {

216  auto

& md = ym.GetMS().GetMD();

218  if

(pubmed_date.

_month

>= 1 && pubmed_date.

_month

<= 12 && md.IsSetDay()) {

219

pubmed_date.

_day

= NStr::StringToNumeric<int>(md.GetDay().Get());

222  else if

(ym.GetMS().IsSeason()) {

223  auto

& season = ym.GetMS().GetSeason().Get();

224  auto

pos = season.find(

'-'

);

247  s_ForeachToken

(medline_date, [](

char

cch) ->

bool

{

return

s_Facet.is(ctype_base::alnum, cch); },

248

[&pubmed_date](string::iterator p, string::iterator q) -> string::iterator {

252  if

(pubmed_date.

_year

== 0 && num >= 1800 && num <= 2100)

253

pubmed_date.

_year

= num;

254  else if

(pubmed_date.

_month

== 0 && num >= 1 && num <= 12)

255

pubmed_date.

_month

= num;

256  else if

(pubmed_date.

_month

!= 0 && pubmed_date.

_day

== 0 && num >= 1 && num <= 31)

257

pubmed_date.

_day

= num;

259  else if

(pubmed_date.

_month

== 0) {

278

std_date.

SetYear

(NStr::StringToNumeric<CDate_std::TYear>(adate.

GetYear

().

Get

()));

280

std_date.

SetDay

(NStr::StringToNumeric<CDate_std::TDay>(adate.

GetDay

().

Get

()));

284  string

str_date = adate.

GetYear

();

286  if

(!adate.

GetDay

().

Get

().empty()) str_date +=

" "

+ adate.

GetDay

();

299  if

(

journal

.IsSetISOAbbreviation()) {

301

iso->SetIso_jta(

journal

.GetISOAbbreviation());

302

title->

Set

().push_back(iso);

307

title->

Set

().push_back(mljta);

311

issn->SetIssn(

journal

.GetISSN());

312

title->

Set

().push_back(issn);

317

name->SetName(

journal

.GetTitle());

318

title->

Set

().push_back(name);

329  const string

& ref_type)

332  string

attr_ref_type = CCommentsCorrections::C_Attlist::GetTypeInfo_enum_EAttlist_RefType()->

333

FindName(ref->GetAttlist().GetRefType(),

false

);

334  if

(attr_ref_type == ref_type) {

337  if

(ref->IsSetNote()) {

338  if

(temp.back() !=

'.'

)

339

temp.push_back(

'.'

);

342  if

(ref->IsSetPMID()) {

343  if

(temp.back() !=

'.'

)

344

temp.push_back(

'.'

);

345

temp +=

" PMID: "

+ ref->GetPMID();

348

citretract->

SetExp

(temp);

359  static const

unordered_map<string, EPubStatus> s_PubStatusId {

373  auto

p = s_PubStatusId.find(publication_status);

389  string

pub_model = CArticle::C_Attlist::GetTypeInfo_enum_EAttlist_PubModel()->

391  if

(pub_model ==

"Electronic-Print"

|| pub_model ==

"Electronic-eCollection"

) {

404  if

(!volume.empty()) imprint->

SetVolume

(volume);

407  if

(!issue.empty()) imprint->

SetIssue

(issue);

410  if

(!pages.empty()) imprint->

SetPages

(pages);

414  if

(!list_language.empty())

415

languages = accumulate(

next

(list_language.begin()), list_language.end(), list_language.front()->Get(),

416

[](

const auto

& s,

const auto

& e) ->

string

{ return s +

","

+ e->Get(); });

434  string

pub_status = CPubMedPubDate::C_Attlist::GetTypeInfo_enum_EAttlist_PubStatus()->

435

FindName(pub_date->GetAttlist().GetPubStatus(),

false

);

439

pub_stat_date->SetPubstatus(eps);

441

date_set->

Set

().push_back(pub_stat_date);

472  bool

has_authors = any_of(list_author.begin(), list_author.end(),

473

[](

const CRef<CAuthor>

& auth)->bool { return s_IsValidYN(*auth); });

475  bool

std_format = any_of(list_author.begin(), list_author.end(), [](

const CRef<CAuthor>

& auth)->bool {

476

return s_IsValidYN(*auth) && (auth->GetLC().IsCollectiveName() ||

477

(auth->IsSetAffiliationInfo() && !auth->GetAffiliationInfo().empty())); });

480  for

(

auto

author : list_author) {

484  if

(author->GetLC().IsCollectiveName()) {

486

author->GetLC().GetCollectiveName().GetCollectiveName()));

492

auth->SetName(*person);

493  auto

& list_affiliation_info = author->GetAffiliationInfo();

494  if

(!list_affiliation_info.empty()) {

495

list<string> affiliations;

496  for

(

auto

affiliation_info : list_affiliation_info) {

498  if

(!affiliation.empty()) affiliations.emplace_back(std::move(affiliation));

500  if

(!affiliations.empty()) {

502

affil->

SetStr

(accumulate(

next

(affiliations.begin()), affiliations.end(), affiliations.front(),

503

[](

const string

& s1,

const string

& s2)->string { return s1 +

"; "

+ s2; }));

504

auth->SetAffil(*affil);

507

auth_names->SetStd().push_back(auth);

518

person->

SetMl

(

"et al"

);

520

auth->SetName(*person);

521

auth_names->SetStd().push_back(auth);

524

auth_names->SetMl().push_back(

"et al"

);

527

author_list->

SetNames

(*auth_names);

535  static const

unordered_map<CArticleId::C_Attlist::EAttlist_IdType, objects::CArticleId::E_Choice> s_ArticleIdTypeId = {

546  auto

p = s_ArticleIdTypeId.find(id_type);

547  return

p != s_ArticleIdTypeId.end() ? p->second : objects::CArticleId::e_Other;

556  if

(title) cit_article->

SetTitle

(*title);

558  if

(author_list) cit_article->

SetAuthors

(*author_list);

571  for

(

auto

mesh_heading_it : mesh_heading_list.

GetMeshHeading

()) {

573  auto

& desc_name = mesh_heading_it->GetDescriptorName();

574  if

(desc_name.GetAttlist().IsSetMajorTopicYN() &&

576

medline_mesh->SetMp(

true

);

577

medline_mesh->SetTerm(desc_name.GetDescriptorName());

578  for

(

auto

qualifier_name_it : mesh_heading_it->GetQualifierName()) {

580  if

(qualifier_name_it->GetAttlist().IsSetMajorTopicYN() &&

583

qual->SetSubh(qualifier_name_it->GetQualifierName());

584

medline_mesh->SetQual().push_back(qual);

586

mesh.push_back(medline_mesh);

593  for

(

auto

chemical_it : chemical_list.

GetChemical

()) {

595

chem->SetName(chemical_it->GetNameOfSubstance());

597  string

registry_number = chemical_it->GetRegistryNumber();

598  if

(registry_number.empty() || registry_number ==

"0"

)

599

chem->SetType(chem->eType_nameonly);

600  else if

(registry_number.size() > 2 &&

toupper

(registry_number[0]) ==

'E'

&&

toupper

(registry_number[1]) ==

'C'

) {

601

chem->SetCit(registry_number.c_str() + 2 + strspn(registry_number.c_str() + 2,

" "

));

602

chem->SetType(chem->eType_ec);

605

chem->SetCit(registry_number);

606

chem->SetType(chem->eType_cas);

608

chems.push_back(chem);

615  static const

unordered_map<string, int> s_DatabankTypeId {

631  auto

p = s_DatabankTypeId.find(databank_name);

632  return

p == s_DatabankTypeId.end() ? -1 : p->second;

638  for

(

auto

databank_it : databank_list.

GetDataBank

()) {

639  string

databank_name = databank_it->GetDataBankName();

643  if

(databank_it->IsSetAccessionNumberList()) {

644  for

(

auto

& accession_number_it : databank_it->GetAccessionNumberList().GetAccessionNumber()) {

647  si

->SetCit(accession_number_it->Get());

648

refs.push_back(

si

);

654

refs.push_back(

si

);

663  for

(

auto

& gene_symbol_it : gene_symbol_list.

GetGeneSymbol

()) {

664

mgenes.push_back(gene_symbol_it->Get());

674

pub_types.push_back(publication_type_it->GetPublicationType());

683  for

(

auto

pub_date : pubmed_pubdates) {

684  if

(pub_date->GetAttlist().GetPubStatus() == status) {

694  string

abstract_text;

697  string label

= abstract_text_it->GetAttlist().IsSetLabel() ?

698

abstract_text_it->GetAttlist().GetLabel() +

": "

:

""

;

699  if

(!abstract_text.empty()) abstract_text.append(

" "

);

702  return

abstract_text;

722  if

(cit.GetArticle().IsSetAbstract())

724  if

(cit.IsSetMeshHeadingList())

726  if

(cit.IsSetChemicalList())

728  if

(cit.GetArticle().IsSetDataBankList())

730  if

(cit.GetArticle().IsSetGrantList())

732  if

(cit.IsSetGeneSymbolList())

746  return

medline_entry;

755  for

(

char

& cch :

str

) {

756  if

(cch ==

'\r'

|| cch ==

'\n'

|| cch ==

'\t'

)

765  static const char

* s_SeasonTab[] = {

"Winter"

,

"Spring"

,

"Summer"

,

"Autumn"

};

770  if

(pm_pub_date.

_month

!= 0) {

771  if

(pm_pub_date.

_month

< 13) {

773  if

(pm_pub_date.

_day

!= 0)

790

std_date.

SetYear

(NStr::StringToNumeric<CDate_std::TYear>(pdate.

GetYear

().

Get

()));

792

std_date.

SetDay

(NStr::StringToNumeric<CDate_std::TDay>(pdate.

GetDay

().

Get

()));

796  auto

& hm = pdate.

GetHM

();

797

std_date.

SetHour

(NStr::StringToNumeric<CDate_std::THour>(hm.GetHour().Get()));

799  auto

&

ms

= hm.GetMS();

800

std_date.

SetMinute

(NStr::StringToNumeric<CDate_std::TMinute>(

ms

.GetMinute().Get()));

801  if

(

ms

.IsSetSecond()) {

802

std_date.

SetSecond

(NStr::StringToNumeric<CDate_std::TSecond>(

ms

.GetSecond().Get()));

811  string

str_date = pdate.

GetYear

();

813  if

(!pdate.

GetDay

().

Get

().empty()) str_date +=

" "

+ pdate.

GetDay

();

836  if

(!title_str.empty() || !vernacular_title_str.empty()) {

838  if

(!title_str.empty()) {

840

name->SetName(title_str);

841

title->

Set

().push_back(name);

843  if

(!vernacular_title_str.empty()) {

845

name->SetTrans(vernacular_title_str);

846

title->

Set

().push_back(name);

855  string

author_medline_name;

858  if

(!author_medline_name.empty() && author_medline_name.back() !=

'.'

)

859

author_medline_name.append(

"."

);

867  if

(lfis.IsSetInitials())

869  else if

(lfis.IsSetForeName())

871  if

(!initials.empty())

872

author_medline_name.append(

" "

+ initials);

873  if

(lfis.IsSetSuffix())

876  return

author_medline_name;

883  if

(pagination.

IsSEM

()) {

884  auto

& sem = pagination.

GetSEM

();

885  if

(sem.IsSetMedlinePgn()) {

889  if

(sem.IsSetStartPage()) {

890  if

(sem.IsSetEndPage())

return

sem.GetStartPage() +

"-"

+ sem.GetEndPage();

891  else return

sem.GetStartPage();

893  if

(sem.IsSetEndPage())

return "-"

+ sem.GetEndPage();

899  if

(pages.empty())

return ""

;

902  s_ForeachToken

(pages, [](

char

cch) ->

bool

{

return

cch !=

','

; },

903

[&parts](string::iterator p, string::iterator q)->string::iterator {

905

x = regex_replace(x, regex(

"\\s+"

),

""

);

907

regex

r

(

"^(.*?)-(.*)$"

);

909

regex_search(x, ma,

r

);

910  if

(ma.empty() || ma.str(1).length() <= ma.str(2).length())

913

parts.push_back(ma.str(1) +

"-"

+ ma.str(1).substr(0, ma.str(1).length() - ma.str(2).length()) + ma.str(2));

917  return

parts.empty() ?

""

: accumulate(

next

(parts.begin()), parts.end(), parts.front(),

918

[](

const string

& s1,

const string

& s2)->string { return s1 +

','

+ s2; });

925  for

(

auto

article_id_it : article_id_list.

GetArticleId

()) {

928  const string

& str_id =

utf8_to_string

(article_id_it->GetArticleId());

930  case

objects::CArticleId::e_Pubmed:

931  id

->SetPubmed(

CPubMedId

(NStr::StringToNumeric<TEntrezId>(str_id)));

933  case

objects::CArticleId::e_Medline:

935  case

objects::CArticleId::e_Doi:

936  id

->SetDoi(

CDOI

(str_id));

938  case

objects::CArticleId::e_Pii:

939  id

->SetPii(

CPII

(str_id));

941  case

objects::CArticleId::e_Pmcid:

942  id

->SetPmcid(

CPmcID

(NStr::StringToNumeric<TEntrezId>(str_id)));

944  case

objects::CArticleId::e_Pmcpid:

945  id

->SetPmcpid(

CPmcPid

(str_id));

947  case

objects::CArticleId::e_Pmpid:

948  id

->SetPmpid(

CPmPid

(str_id));

950  case

objects::CArticleId::e_Other: {

951  string

db = CArticleId::C_Attlist::GetTypeInfo_enum_EAttlist_IdType()->

952

FindName(article_id_it->GetAttlist().GetIdType(),

false

);

957

db_tag->

SetTag

(*obj_id);

958  id

->SetOther(*db_tag);

964

id_set->

Set

().push_back(

id

);

970  const

list<CRef<CELocationID>>* eloc_ids =

nullptr

;

978  for

(

auto

elocation_id_it : *eloc_ids) {

979  string

str_eid_type = CELocationID::C_Attlist::GetTypeInfo_enum_EAttlist_EIdType()->

980

FindName(elocation_id_it->GetAttlist().GetEIdType(),

false

);

981  string type

=

"ELocationID "

+ str_eid_type;

982  string value

= elocation_id_it->GetELocationID();

988

db_tag->

SetTag

(*obj_id);

989  id

->SetOther(*db_tag);

990

id_set->

Set

().push_back(

id

);

1000  for

(

auto

grant_it : grant_list.

GetGrant

()) {

1002  if

(grant_it->IsSetGrantID())

1004  if

(grant_it->IsSetAcronym())

1006  if

(grant_it->IsSetAgency() && !grant_it->GetAgency().Get().empty())

1010

id_nums.push_back(id2);

1019

pubmed_entry->SetPmid(

CPubMedId

(NStr::StringToNumeric<TEntrezId>(

1022  return

pubmed_entry;

#define BEGIN_eutils_SCOPE

string s_GetVernacularTitleStr(const CVernacularTitle &vernacular_title)

string s_GetArticleTitleStr(const CArticleTitle &article_title)

static void s_FillPubtypeList(CMedline_entry::TPub_type &pub_types, const CPublicationTypeList &publication_type_list)

static CRef< CImprint > s_GetImprint(const CPubmedArticle &pubmed_article)

static objects::CArticleId::E_Choice s_GetArticleIdTypeId(const CArticleId &article_id)

void s_ForeachToken(container_type &container, check_type f, proc_type proc)

static string utf8_to_string(const string &str)

static int s_GetDatabankTypeId(const string &databank_name)

static bool s_SetCommentCorrection(CRef< CImprint > &imprint, const CCommentsCorrectionsList &comments_corrections, CCitRetract::EType type, const string &ref_type)

static void s_FillGenes(CMedline_entry::TGene &mgenes, const CGeneSymbolList &gene_symbol_list)

static string s_GetInitialsFromForeName(string fore_name)

static bool s_StringToInt(const string &str, int &i)

static CRef< CMedline_entry > s_GetMedlineEntry(const CPubmedArticle &pubmed_article)

bool s_IsValidYN(const CAuthor &auth)

static pubmed_date_t s_GetPubmedDate(const CPubDate &pub_date)

void s_FillGrants(list< string > &id_nums, const CGrantList &grant_list)

static int s_TranslateMonth(const string &month_str)

string s_GetAuthorMedlineName(const CAuthor &author)

static void s_FillChem(CMedline_entry::TSubstance &chems, const CChemicalList &chemical_list)

static CRef< CCit_jour > s_GetJournalCitation(const CPubmedArticle &pubmed_article)

string s_CleanupText(string str)

CRef< CDate > s_GetDateFromPubMedPubDate(const CPubMedPubDate &pdate)

static CRef< CDate > s_GetDateFromArticleDate(const CArticleDate &adate)

static CRef< CCit_art > s_GetCitation(const CPubmedArticle &pubmed_article)

static CRef< CPubMedPubDate > s_FindPubDateStatus(const list< CRef< CPubMedPubDate >> &pubmed_pubdates, CPubMedPubDate::C_Attlist::EAttlist_PubStatus status)

static CRef< CTitle > s_GetJournalTitle(const CPubmedArticle &pubmed_article)

static string s_GetAbstractText(const CAbstract &abstr)

string s_GetPagination(const CPagination &pagination)

CRef< CTitle > s_MakeTitle(const string &title_str, const string &vernacular_title_str)

CRef< CDate > s_GetDateFromPubDate(const CPubDate &pub_date)

CRef< CArticleIdSet > s_GetArticleIdSet(const CArticleIdList &article_id_list, const CArticle *article)

static CRef< CAuth_list > s_GetAuthorList(const CArticle &article)

static void s_FillXref(CMedline_entry::TXref &refs, const CDataBankList &databank_list)

static EPubStatus s_GetPublicationStatusId(const string &publication_status)

string s_Utf8TextListToString(const list< CRef< TE >> &text_list)

static void s_FillMesh(CMedline_entry::TMesh &mesh, const CMeshHeadingList &mesh_heading_list)

void s_ToLower(StringT &str)

BEGIN_eutils_SCOPE NCBI_USING_NAMESPACE_STD

void s_ToUpper(StringT &str)

User-defined methods of the data storage class.

std::string s_TextListToString(const std::list< ncbi::CRef< TE >> &text_list)

ncbi::CRef< ncbi::objects::CTitle > s_GetTitle(const D &doc)

User-defined methods of the data storage class.

@Affil.hpp User-defined methods of the data storage class.

@Auth_list.hpp User-defined methods of the data storage class.

CPublicationTypeList –.

ncbi::CRef< ncbi::objects::CPubmed_entry > ToPubmed_entry(void) const

static const char si[8][64]

static DLIST_TYPE *DLIST_NAME() first(DLIST_LIST_TYPE *list)

static DLIST_TYPE *DLIST_NAME() next(DLIST_LIST_TYPE *list, DLIST_TYPE *item)

static const char * str(char *buf, int n)

void Reset(void)

Reset reference object.

static EEncoding GuessEncoding(const CTempString &src)

Guess the encoding of the C/C++ string.

static CStringUTF8 AsUTF8(const CTempString &src, EEncoding encoding, EValidate validate=eNoValidate)

Convert into UTF8 from a C/C++ string.

static bool EqualNocase(const CTempString s1, SIZE_TYPE pos, SIZE_TYPE n, const char *s2)

Case-insensitive equality of a substring with another string.

@ fConvErr_NoThrow

Do not throw an exception on error.

static const char label[]

void SetPages(const TPages &value)

Assign a value to Pages data member.

void SetIds(TIds &value)

Assign a value to Ids data member.

void SetTitle(TTitle &value)

Assign a value to Title data member.

void SetRetract(TRetract &value)

Assign a value to Retract data member.

void SetIssue(const TIssue &value)

Assign a value to Issue data member.

void SetFrom(TFrom &value)

Assign a value to From data member.

void SetLanguage(const TLanguage &value)

Assign a value to Language data member.

void SetType(TType value)

Assign a value to Type data member.

void SetAuthors(TAuthors &value)

Assign a value to Authors data member.

TStr & SetStr(void)

Select the variant.

void SetVolume(const TVolume &value)

Assign a value to Volume data member.

void SetNames(TNames &value)

Assign a value to Names data member.

void SetDate(TDate &value)

Assign a value to Date data member.

EPubStatus

Status Dates points of publication.

Tdata & Set(void)

Assign a value to data member.

void SetHistory(THistory &value)

Assign a value to History data member.

void SetPubstatus(TPubstatus value)

Assign a value to Pubstatus data member.

Tdata & Set(void)

Assign a value to data member.

EType

retraction of an entry

void SetExp(const TExp &value)

Assign a value to Exp data member.

Tdata & Set(void)

Assign a value to data member.

@ ePubStatus_pubmed

article citation first appeared in PubMed

@ ePubStatus_accepted

accepted for publication

@ ePubStatus_ppublish

published in print by publisher

@ ePubStatus_premedline

date into PreMedline status

@ ePubStatus_revised

article revised by publisher/author

@ ePubStatus_received

date manuscript received for review

@ ePubStatus_pubmedr

article citation revision in PubMed

@ ePubStatus_aheadofprint

epublish, but will be followed by print

@ ePubStatus_medline

date made a MEDLINE record

@ ePubStatus_epublish

published electronically by publisher

@ ePubStatus_pmc

article first appeared in PubMed Central

@ ePubStatus_pmcr

article revision in PubMed Central

@ eType_retracted

this citation retracted

@ eType_notice

this citation is a retraction notice

@ eType_erratum

this is a published erratum

@ eType_in_error

an erratum was published about this

TMl & SetMl(void)

Select the variant.

void SetSeason(const TSeason &value)

Assign a value to Season data member.

void SetYear(TYear value)

Assign a value to Year data member.

void SetMinute(TMinute value)

Assign a value to Minute data member.

void SetTag(TTag &value)

Assign a value to Tag data member.

void SetHour(THour value)

Assign a value to Hour data member.

void SetMonth(TMonth value)

Assign a value to Month data member.

TStd & SetStd(void)

Select the variant.

void SetDay(TDay value)

Assign a value to Day data member.

TConsortium & SetConsortium(void)

Select the variant.

TStr & SetStr(void)

Select the variant.

void SetSecond(TSecond value)

Assign a value to Second data member.

void SetDb(const TDb &value)

Assign a value to Db data member.

TStr & SetStr(void)

Select the variant.

TGene & SetGene(void)

Assign a value to Gene data member.

void SetEm(TEm &value)

Assign a value to Em data member.

TIdnum & SetIdnum(void)

Assign a value to Idnum data member.

void SetStatus(TStatus value)

Assign a value to Status data member.

void SetCit(TCit &value)

Assign a value to Cit data member.

list< CRef< CMedline_rn > > TSubstance

void SetAbstract(const TAbstract &value)

Assign a value to Abstract data member.

list< CRef< CMedline_si > > TXref

TXref & SetXref(void)

Assign a value to Xref data member.

list< CRef< CMedline_mesh > > TMesh

void SetPmid(const TPmid &value)

Assign a value to Pmid data member.

TPub_type & SetPub_type(void)

Assign a value to Pub_type data member.

TMesh & SetMesh(void)

Assign a value to Mesh data member.

TSubstance & SetSubstance(void)

Assign a value to Substance data member.

@ eStatus_publisher

record as supplied by publisher

@ eStatus_premedline

premedline record

@ eType_carbbank

Carbohydrate Structure Database.

@ eType_psd

Protein Sequence Database (Japan)

@ eType_embl

EMBL Data Library.

@ eType_swissprot

SwissProt.

@ eType_pir

Protein Identification Resource.

@ eType_hdb

Hybridoma Data Bank.

@ eType_hgml

Human Gene Map Library.

@ eType_pdb

Protein Data Bank (Brookhaven)

@ eType_ddbj

DNA Data Bank of Japan.

@ eType_msd

Microbial Strains Database.

@ eType_mim

Mendelian Inheritance in Man.

@ eType_prfseqdb

Protein Research Foundation (Japan)

@ eType_gdb

Genome Data Base.

bool IsCollectiveName(void) const

Check if variant CollectiveName is selected.

TValidYN GetValidYN(void) const

Get the ValidYN member data.

bool IsELocationID(void) const

Check if variant ELocationID is selected.

const TCollectiveName & GetCollectiveName(void) const

Get the CollectiveName member data.

const TELocationID & GetELocationID(void) const

Get the variant data.

const TAuthorList & GetAuthorList(void) const

Get the AuthorList member data.

const TArticleDate & GetArticleDate(void) const

Get the ArticleDate member data.

const TLanguage & GetLanguage(void) const

Get the Language member data.

TIdType GetIdType(void) const

Get the IdType member data.

const TYM & GetYM(void) const

Get the variant data.

const TPE & GetPE(void) const

Get the variant data.

const TYear & GetYear(void) const

Get the Year member data.

const TMeshHeading & GetMeshHeading(void) const

Get the MeshHeading member data.

const TDay & GetDay(void) const

Get the Day member data.

const TPublicationType & GetPublicationType(void) const

Get the PublicationType member data.

const TMedlineCitation & GetMedlineCitation(void) const

Get the MedlineCitation member data.

const TChemical & GetChemical(void) const

Get the Chemical member data.

bool IsSetVolume(void) const

Check if a value has been assigned to Volume data member.

const THM & GetHM(void) const

Get the HM member data.

TPubModel GetPubModel(void) const

Get the PubModel member data.

const TPubmedData & GetPubmedData(void) const

Get the PubmedData member data.

bool IsSetArticleTitle(void) const

Check if a value has been assigned to ArticleTitle data member.

const Tdata & Get(void) const

Get the member data.

const TMedlinePgn & GetMedlinePgn(void) const

Get the variant data.

const TGrant & GetGrant(void) const

Get the Grant member data.

bool IsLFIS(void) const

Check if variant LFIS is selected.

const TPubDate & GetPubDate(void) const

Get the PubDate member data.

const TArticle & GetArticle(void) const

Get the Article member data.

const TSEM & GetSEM(void) const

Get the variant data.

const TCommentsCorrections & GetCommentsCorrections(void) const

Get the CommentsCorrections member data.

const THistory & GetHistory(void) const

Get the History member data.

bool IsSetAuthorList(void) const

Check if a value has been assigned to AuthorList data member.

const TCommentsCorrectionsList & GetCommentsCorrectionsList(void) const

Get the CommentsCorrectionsList member data.

const TPE_2 & GetPE_2(void) const

Get the PE_2 member data.

bool IsSetCompleteYN(void) const

Check if a value has been assigned to CompleteYN data member.

const TIssue & GetIssue(void) const

Get the Issue member data.

bool IsSetIssue(void) const

Check if a value has been assigned to Issue data member.

const TMonth & GetMonth(void) const

Get the Month member data.

const TCollectiveName & GetCollectiveName(void) const

Get the variant data.

const TAttlist & GetAttlist(void) const

Get the Attlist member data.

const TArticleTitle & GetArticleTitle(void) const

Get the ArticleTitle member data.

bool IsSetELocationID(void) const

Check if a value has been assigned to ELocationID data member.

const TLFIS & GetLFIS(void) const

Get the variant data.

const TELocationID & GetELocationID(void) const

Get the ELocationID member data.

const TPubMedPubDate & GetPubMedPubDate(void) const

Get the PubMedPubDate member data.

bool IsSetValidYN(void) const

Check if a value has been assigned to ValidYN data member.

const TGeneSymbol & GetGeneSymbol(void) const

Get the GeneSymbol member data.

const TPublicationStatus & GetPublicationStatus(void) const

Get the PublicationStatus member data.

const Tdata & Get(void) const

Get the member data.

const TMedlinePgn & GetMedlinePgn(void) const

Get the MedlinePgn member data.

const Tdata & Get(void) const

Get the member data.

bool IsYM(void) const

Check if variant YM is selected.

const TMedlineTA & GetMedlineTA(void) const

Get the MedlineTA member data.

const TAttlist & GetAttlist(void) const

Get the Attlist member data.

const TPagination & GetPagination(void) const

Get the Pagination member data.

const TMedlineJournalInfo & GetMedlineJournalInfo(void) const

Get the MedlineJournalInfo member data.

const TJournal & GetJournal(void) const

Get the Journal member data.

bool IsSetCommentsCorrectionsList(void) const

Check if a value has been assigned to CommentsCorrectionsList data member.

const TDataBank & GetDataBank(void) const

Get the DataBank member data.

const TArticleIdList & GetArticleIdList(void) const

Get the ArticleIdList member data.

TCompleteYN GetCompleteYN(void) const

Get the CompleteYN member data.

bool IsSetIdType(void) const

Check if a value has been assigned to IdType data member.

bool IsSetHM(void) const

Check if a value has been assigned to HM data member.

const Tdata & Get(void) const

Get the member data.

const TArticleId & GetArticleId(void) const

Get the ArticleId member data.

const TAuthor & GetAuthor(void) const

Get the Author member data.

const TMonth & GetMonth(void) const

Get the Month member data.

bool IsMedlinePgn(void) const

Check if variant MedlinePgn is selected.

const TVolume & GetVolume(void) const

Get the Volume member data.

bool IsSetHistory(void) const

Check if a value has been assigned to History data member.

const Tdata & Get(void) const

Get the member data.

const TLC & GetLC(void) const

Get the LC member data.

bool IsMedlineDate(void) const

Check if variant MedlineDate is selected.

bool IsSEM(void) const

Check if variant SEM is selected.

const TAttlist & GetAttlist(void) const

Get the Attlist member data.

const TAttlist & GetAttlist(void) const

Get the Attlist member data.

const TDay & GetDay(void) const

Get the Day member data.

const Tdata & Get(void) const

Get the member data.

bool IsPE(void) const

Check if variant PE is selected.

const TMedlineDate & GetMedlineDate(void) const

Get the variant data.

const TAbstractText & GetAbstractText(void) const

Get the AbstractText member data.

const TYear & GetYear(void) const

Get the Year member data.

@ eAttlist_PubStatus_entrez

@ eAttlist_PubStatus_pubmed

@ eAttlist_DateType_Electronic

@ eAttlist_MajorTopicYN_Y

@ eAttlist_MajorTopicYN_Y

@ eAttlist_Status_Publisher

@ eAttlist_Status_MEDLINE

@ eAttlist_Status_Completed

@ eAttlist_Status_OLDMEDLINE

@ eAttlist_IdType_medline

string UTF8ToAsciiString(const char *src, const SUnicodeTranslation *default_translation, const TUnicodeTable *table=NULL, EConversionResult *result=NULL)

Convert UTF8 into ASCII string.

const GenericPointer< typename T::ValueType > T2 value

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static const char * locale

CRef< CPub > journal(ParserPtr pp, char *bptr, char *eptr, CRef< CAuth_list > &auth_list, CRef< CTitle::C_E > &title, bool has_muid, CRef< CCit_art > &cit_art, Int4 er)

static SLJIT_INLINE sljit_ins ms(sljit_gpr r, sljit_s32 d, sljit_gpr x, sljit_gpr b)


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