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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Pssm___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/scoremat/Pssm_.hpp Source File

IsSetIsProtein(

)

;

CanGetIsProtein(

)

;

ResetIsProtein(

);

SetDefaultIsProtein(

);

IsSetIdentifier(

)

;

CanGetIdentifier(

)

;

ResetIdentifier(

);

IsSetNumRows(

)

;

CanGetNumRows(

)

;

ResetNumRows(

);

IsSetNumColumns(

)

;

CanGetNumColumns(

)

;

ResetNumColumns(

);

IsSetRowLabels(

)

;

CanGetRowLabels(

)

;

ResetRowLabels(

);

& GetRowLabels(

)

;

IsSetByRow(

)

;

CanGetByRow(

)

;

ResetByRow(

);

SetDefaultByRow(

);

GetByRow(

)

;

& SetByRow(

);

IsSetQuery(

)

;

CanGetQuery(

)

;

ResetQuery(

);

& GetQuery(

)

;

& SetQuery(

);

IsSetIntermediateData(

)

;

CanGetIntermediateData(

)

;

ResetIntermediateData(

);

IsSetFinalData(

)

;

CanGetFinalData(

)

;

ResetFinalData(

);

& GetFinalData(

)

;

Reset(

);

Position-specific scoring matrix.

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SCOREMAT_EXPORT

const TIdentifier & GetIdentifier(void) const

Get the Identifier member data.

const TQuery & GetQuery(void) const

Get the Query member data.

TIsProtein & SetIsProtein(void)

Assign a value to IsProtein data member.

TNumRows GetNumRows(void) const

Get the NumRows member data.

bool IsSetFinalData(void) const

Final representation for the PSSM Check if a value has been assigned to FinalData data member.

CRef< TIntermediateData > m_IntermediateData

bool CanGetByRow(void) const

Check if it is safe to call GetByRow method.

TNumRows & SetNumRows(void)

Assign a value to NumRows data member.

TRowLabels & SetRowLabels(void)

Assign a value to RowLabels data member.

list< string > m_RowLabels

void ResetIsProtein(void)

Reset IsProtein data member.

bool CanGetIsProtein(void) const

Check if it is safe to call GetIsProtein method.

TNumColumns & SetNumColumns(void)

Assign a value to NumColumns data member.

CPssmIntermediateData TIntermediateData

TIsProtein GetIsProtein(void) const

Get the IsProtein member data.

TByRow & SetByRow(void)

Assign a value to ByRow data member.

void ResetNumRows(void)

Reset NumRows data member.

bool CanGetNumColumns(void) const

Check if it is safe to call GetNumColumns method.

bool CanGetRowLabels(void) const

Check if it is safe to call GetRowLabels method.

const TRowLabels & GetRowLabels(void) const

Get the RowLabels member data.

bool IsSetIntermediateData(void) const

both intermediateData and finalData can be provided, but at least one of them must be provided.

bool CanGetIntermediateData(void) const

Check if it is safe to call GetIntermediateData method.

const TFinalData & GetFinalData(void) const

Get the FinalData member data.

bool CanGetFinalData(void) const

Check if it is safe to call GetFinalData method.

void SetDefaultByRow(void)

Assign default value to ByRow data member.

TNumColumns GetNumColumns(void) const

Get the NumColumns member data.

void SetDefaultIsProtein(void)

Assign default value to IsProtein data member.

bool IsSetRowLabels(void) const

row-labels is given to note the order of residue types so that it can be cross-checked between applic...

CRef< TIdentifier > m_Identifier

bool IsSetNumRows(void) const

The dimensions of the matrix are returned so the client can verify that all data was received.

CPssm_Base & operator=(const CPssm_Base &)

list< string > TRowLabels

void ResetByRow(void)

Reset ByRow data member.

bool IsSetQuery(void) const

PSSM representative sequence (master) Check if a value has been assigned to Query data member.

bool CanGetQuery(void) const

Check if it is safe to call GetQuery method.

CPssm_Base(const CPssm_Base &)

Tparent::CMemberIndex< E_memberIndex, 10 > TmemberIndex

bool IsSetNumColumns(void) const

number of columns Check if a value has been assigned to NumColumns data member.

bool CanGetNumRows(void) const

Check if it is safe to call GetNumRows method.

const TIntermediateData & GetIntermediateData(void) const

Get the IntermediateData member data.

CRef< TFinalData > m_FinalData

TByRow GetByRow(void) const

Get the ByRow member data.

bool IsSetIdentifier(void) const

PSSM identifier Check if a value has been assigned to Identifier data member.

DECLARE_INTERNAL_TYPE_INFO()

CPssmFinalData TFinalData

bool IsSetIsProtein(void) const

Is the this a protein or nucleotide scoring matrix? Check if a value has been assigned to IsProtein d...

bool IsSetByRow(void) const

are matrices stored row by row? Check if a value has been assigned to ByRow data member.

void ResetNumColumns(void)

Reset NumColumns data member.

bool CanGetIdentifier(void) const

Check if it is safe to call GetIdentifier method.

const GenericPointer< typename T::ValueType > T2 value

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