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NCBI C++ ToolKit: include/objects/scoremat/Pssm.hpp Source File

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39 #ifndef OBJECTS_SCOREMAT_PSSM_HPP 40 #define OBJECTS_SCOREMAT_PSSM_HPP 69  void

GetQuerySequenceData(

CNCBIstdaa

& sequence)

const

;

73  double

GetLambda()

const

;

74  double

GetKappa()

const

;

76  double

GetLambdaUngapped()

const

;

77  double

GetKappaUngapped()

const

;

78  double

GetHUngapped()

const

;

80  void

SetLambda(

double val

);

81  void

SetKappa(

double val

);

82  void

SetH(

double val

);

83  void

SetLambdaUngapped(

double val

);

84  void

SetKappaUngapped(

double val

);

85  void

SetHUngapped(

double val

);

User-defined methods of the data storage class.

Position-specific scoring matrix.

static const double kInvalidStat

CPssm & operator=(const CPssm &value)

CPssm(const CPssm &value)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

NCBI_NS_STD::string::size_type SIZE_TYPE

#define NCBI_SCOREMAT_EXPORT

const GenericPointer< typename T::ValueType > T2 value

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