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NCBI C++ ToolKit: include/objects/scoremat/PssmWithParameters_.hpp Source File

41 #ifndef OBJECTS_SCOREMAT_PSSMWITHPARAMETERS_BASE_HPP 42 #define OBJECTS_SCOREMAT_PSSMWITHPARAMETERS_BASE_HPP 48 #ifndef BEGIN_objects_SCOPE 49 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 50 # define END_objects_SCOPE END_SCOPE(objects) 117 bool

IsSetPssm(

void

)

const

;

124 bool

CanGetPssm(

void

)

const

;

127 void

ResetPssm(

void

);

133 const TPssm

& GetPssm(

void

)

const

;

145 TPssm

& SetPssm(

void

);

162 bool

IsSetParams(

void

)

const

;

169 bool

CanGetParams(

void

)

const

;

172 void

ResetParams(

void

);

193 virtual void

Reset(

void

);

219 return m_Pssm

.NotEmpty();

Envelope containing PSSM and the parameters used to create it.

Base class for all serializable objects.

void ThrowUnassigned(TMemberIndex index) const

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

virtual void SetParams()

Called at the beginning of Run, before creating thread pool.

#define NCBI_SCOREMAT_EXPORT

DECLARE_INTERNAL_TYPE_INFO()

void ResetPssm(void)

Reset Pssm data member.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

TPssm & SetPssm(void)

Assign a value to Pssm data member.

CPssmWithParameters_Base & operator=(const CPssmWithParameters_Base &)

bool CanGetParams(void) const

Check if it is safe to call GetParams method.

const TParams & GetParams(void) const

Get the Params member data.

bool CanGetPssm(void) const

Check if it is safe to call GetPssm method.

bool IsSetPssm(void) const

This field is applicable to PSI-BLAST and formatrpsdb.

const TPssm & GetPssm(void) const

Get the Pssm member data.

bool IsSetParams(void) const

This field's rpsdbparams is used to specify the values of options for processing by formatrpsdb.

CPssmWithParameters_Base(const CPssmWithParameters_Base &)

const GenericPointer< typename T::ValueType > T2 value

static CRef< CUser_object > GetParams()

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