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NCBI C++ ToolKit: include/objects/scoremat/PssmFinalData_.hpp Source File

IsSetScores(

)

;

CanGetScores(

)

;

ResetScores(

);

& GetScores(

)

;

IsSetLambda(

)

;

CanGetLambda(

)

;

ResetLambda(

);

GetLambda(

)

;

IsSetKappa(

)

;

CanGetKappa(

)

;

ResetKappa(

);

GetKappa(

)

;

& SetKappa(

);

IsSetH(

)

;

CanGetH(

)

;

GetH(

)

;

IsSetScalingFactor(

)

;

CanGetScalingFactor(

)

;

ResetScalingFactor(

);

SetDefaultScalingFactor(

);

IsSetLambdaUngapped(

)

;

CanGetLambdaUngapped(

)

;

ResetLambdaUngapped(

);

IsSetKappaUngapped(

)

;

CanGetKappaUngapped(

)

;

ResetKappaUngapped(

);

IsSetHUngapped(

)

;

CanGetHUngapped(

)

;

ResetHUngapped(

);

IsSetWordScoreThreshold(

)

;

CanGetWordScoreThreshold(

)

;

ResetWordScoreThreshold(

);

Reset(

);

void SetScores(objects::CSeq_align &seq_align, objects::CScope &scope, const string &matrix_name="BLOSUM62")

=========================================================================== PSI-BLAST,...

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SCOREMAT_EXPORT

bool CanGetHUngapped(void) const

Check if it is safe to call GetHUngapped method.

TWordScoreThreshold & SetWordScoreThreshold(void)

Assign a value to WordScoreThreshold data member.

void ResetH(void)

Reset H data member.

TH GetH(void) const

Get the H member data.

TKappa GetKappa(void) const

Get the Kappa member data.

const TScores & GetScores(void) const

Get the Scores member data.

THUngapped & SetHUngapped(void)

Assign a value to HUngapped data member.

double TWordScoreThreshold

bool IsSetKappaUngapped(void) const

Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned...

bool CanGetLambda(void) const

Check if it is safe to call GetLambda method.

bool CanGetLambdaUngapped(void) const

Check if it is safe to call GetLambdaUngapped method.

bool IsSetLambdaUngapped(void) const

Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned...

bool IsSetH(void) const

Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned...

TKappaUngapped & SetKappaUngapped(void)

Assign a value to KappaUngapped data member.

TWordScoreThreshold GetWordScoreThreshold(void) const

Get the WordScoreThreshold member data.

void ResetLambda(void)

Reset Lambda data member.

TScalingFactor GetScalingFactor(void) const

Get the ScalingFactor member data.

TH & SetH(void)

Assign a value to H data member.

void ResetHUngapped(void)

Reset HUngapped data member.

double m_WordScoreThreshold

bool IsSetWordScoreThreshold(void) const

Word score threshold Check if a value has been assigned to WordScoreThreshold data member.

bool IsSetScalingFactor(void) const

scaling factor used to obtain more precision when building the PSSM.

void ResetWordScoreThreshold(void)

Reset WordScoreThreshold data member.

bool IsSetScores(void) const

PSSM's scores Check if a value has been assigned to Scores data member.

TKappa & SetKappa(void)

Assign a value to Kappa data member.

bool CanGetWordScoreThreshold(void) const

Check if it is safe to call GetWordScoreThreshold method.

bool IsSetLambda(void) const

Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned...

bool CanGetKappa(void) const

Check if it is safe to call GetKappa method.

bool CanGetKappaUngapped(void) const

Check if it is safe to call GetKappaUngapped method.

Tparent::CMemberIndex< E_memberIndex, 10 > TmemberIndex

void ResetKappaUngapped(void)

Reset KappaUngapped data member.

THUngapped GetHUngapped(void) const

Get the HUngapped member data.

bool CanGetScalingFactor(void) const

Check if it is safe to call GetScalingFactor method.

TScalingFactor & SetScalingFactor(void)

Assign a value to ScalingFactor data member.

TScores & SetScores(void)

Assign a value to Scores data member.

TLambdaUngapped GetLambdaUngapped(void) const

Get the LambdaUngapped member data.

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetHUngapped(void) const

Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned...

CPssmFinalData_Base & operator=(const CPssmFinalData_Base &)

bool CanGetH(void) const

Check if it is safe to call GetH method.

bool CanGetScores(void) const

Check if it is safe to call GetScores method.

void ResetLambdaUngapped(void)

Reset LambdaUngapped data member.

TLambdaUngapped & SetLambdaUngapped(void)

Assign a value to LambdaUngapped data member.

bool IsSetKappa(void) const

Karlin & Altschul parameter produced during the PSSM's calculation Check if a value has been assigned...

TKappaUngapped GetKappaUngapped(void) const

Get the KappaUngapped member data.

CPssmFinalData_Base(const CPssmFinalData_Base &)

TLambda & SetLambda(void)

Assign a value to Lambda data member.

void SetDefaultScalingFactor(void)

Assign default value to ScalingFactor data member.

void ResetScalingFactor(void)

Reset ScalingFactor data member.

void ResetKappa(void)

Reset Kappa data member.

TLambda GetLambda(void) const

Get the Lambda member data.

const GenericPointer< typename T::ValueType > T2 value

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