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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/OrgName___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seqfeat/OrgName_.hpp Source File

ResetSelection(

);

E_Choice Which(

)

;

CheckSelected(E_Choice index)

;

NCBI_NORETURN

ThrowInvalidSelection(E_Choice index)

;

SelectionName(E_Choice index);

IsBinomial(

)

;

& GetBinomial(

)

;

IsVirus(

)

;

& GetVirus(

)

;

& SetVirus(

);

IsHybrid(

)

;

& GetHybrid(

)

;

IsNamedhybrid(

)

;

IsPartial(

)

;

& GetPartial(

)

;

*

sm_SelectionNames[];

NCBI_NS_NCBI::CUnionBuffer<NCBI_NS_STD::string>

;

list< CRef< COrgMod > >

;

IsSetName(

)

;

CanGetName(

)

;

ResetName(

);

& GetName(

)

;

& SetName(

);

IsSetAttrib(

)

;

CanGetAttrib(

)

;

ResetAttrib(

);

& GetAttrib(

)

;

IsSetMod(

)

;

CanGetMod(

)

;

ResetMod(

);

& GetMod(

)

;

& SetMod(

);

IsSetLineage(

)

;

CanGetLineage(

)

;

ResetLineage(

);

& GetLineage(

)

;

IsSetGcode(

)

;

CanGetGcode(

)

;

ResetGcode(

);

IsSetMgcode(

)

;

CanGetMgcode(

)

;

ResetMgcode(

);

GetMgcode(

)

;

IsSetDiv(

)

;

CanGetDiv(

)

;

ResetDiv(

);

& GetDiv(

)

;

IsSetPgcode(

)

;

CanGetPgcode(

)

;

ResetPgcode(

);

GetPgcode(

)

;

Reset(

);

( m_choice != index )

ThrowInvalidSelection(index);

DoSelect(index, pool);

Select(index, reset, 0);

m_choice == e_Binomial;

m_choice == e_Virus;

CheckSelected(e_Virus);

m_choice == e_Hybrid;

m_choice == e_Namedhybrid;

m_choice == e_Partial;

.NotEmpty();

= std::forward<COrgName_Base::TDiv>(

);

@OrgMod.hpp User-defined methods of the data storage class.

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQFEAT_EXPORT

const TMod & GetMod(void) const

Get the Mod member data.

bool CanGetMod(void) const

Check if it is safe to call GetMod method.

TDiv & SetDiv(void)

Assign a value to Div data member.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

bool CanGetName(void) const

Check if it is safe to call GetName method.

const TLineage & GetLineage(void) const

Get the Lineage member data.

bool IsSetPgcode(void) const

plastid genetic code Check if a value has been assigned to Pgcode data member.

bool CanGetDiv(void) const

Check if it is safe to call GetDiv method.

const TDiv & GetDiv(void) const

Get the Div member data.

void ResetMgcode(void)

Reset Mgcode data member.

const TVirus & GetVirus(void) const

Get the variant data.

TMgcode GetMgcode(void) const

Get the Mgcode member data.

list< CRef< COrgMod > > m_Mod

E_Choice Which(void) const

Which variant is currently selected.

TGcode GetGcode(void) const

Get the Gcode member data.

bool IsHybrid(void) const

Check if variant Hybrid is selected.

C_Name & operator=(const C_Name &)

NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string > m_string

bool IsNamedhybrid(void) const

Check if variant Namedhybrid is selected.

TVirus & SetVirus(void)

Select the variant.

TMgcode & SetMgcode(void)

Assign a value to Mgcode data member.

bool IsSetLineage(void) const

lineage with semicolon separators Check if a value has been assigned to Lineage data member.

DECLARE_INTERNAL_TYPE_INFO()

bool IsPartial(void) const

Check if variant Partial is selected.

COrgName_Base & operator=(const COrgName_Base &)

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

TLineage & SetLineage(void)

Assign a value to Lineage data member.

const TName & GetName(void) const

Get the Name member data.

bool IsSetMgcode(void) const

mitochondrial genetic code Check if a value has been assigned to Mgcode data member.

bool CanGetMgcode(void) const

Check if it is safe to call GetMgcode method.

TPgcode & SetPgcode(void)

Assign a value to Pgcode data member.

void ResetGcode(void)

Reset Gcode data member.

COrgName_Base(const COrgName_Base &)

NCBI_NS_NCBI::CSerialObject * m_object

void ResetPgcode(void)

Reset Pgcode data member.

bool CanGetLineage(void) const

Check if it is safe to call GetLineage method.

bool IsSetDiv(void) const

GenBank division code Check if a value has been assigned to Div data member.

E_Choice

Choice variants.

bool IsSetMod(void) const

Check if a value has been assigned to Mod data member.

list< CRef< COrgMod > > TMod

CBinomialOrgName TNamedhybrid

bool IsSetAttrib(void) const

attribution of name Check if a value has been assigned to Attrib data member.

bool CanGetAttrib(void) const

Check if it is safe to call GetAttrib method.

bool IsSetGcode(void) const

genetic code (see CdRegion) Check if a value has been assigned to Gcode data member.

TMod & SetMod(void)

Assign a value to Mod data member.

bool CanGetGcode(void) const

Check if it is safe to call GetGcode method.

DECLARE_INTERNAL_TYPE_INFO()

TAttrib & SetAttrib(void)

Assign a value to Attrib data member.

bool CanGetPgcode(void) const

Check if it is safe to call GetPgcode method.

Tparent::CMemberIndex< E_memberIndex, 9 > TmemberIndex

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

TPgcode GetPgcode(void) const

Get the Pgcode member data.

bool IsSetName(void) const

Check if a value has been assigned to Name data member.

const TAttrib & GetAttrib(void) const

Get the Attrib member data.

TGcode & SetGcode(void)

Assign a value to Gcode data member.

CBinomialOrgName TBinomial

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

bool IsVirus(void) const

Check if variant Virus is selected.

bool IsBinomial(void) const

Check if variant Binomial is selected.

@ e_Hybrid

hybrid between organisms

@ e_Namedhybrid

some hybrids have genus x species name

@ e_Binomial

genus/species type name

@ e_Virus

virus names are different

const GenericPointer< typename T::ValueType > T2 value

void SetPartial(CSeq_loc &loc, CRef< CSeq_feat > feat, CSeq_loc::TStrand strand, bool partial_start, bool partial_stop)

void SetDiv(CRef< objects::CSeq_entry > entry, string div)

void SetGcode(CRef< objects::CSeq_entry > entry, objects::COrgName::TGcode gcode)

void SetLineage(CRef< objects::CSeq_entry > entry, string lineage)

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