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NCBI C++ ToolKit: include/objects/varrep/NtSite_.hpp Source File

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( m_choice != index )

ThrowInvalidSelection(index);

DoSelect(index, pool);

Select(index, reset, 0);

m_choice == e_Val;

CheckSelected(e_Val);

m_choice == e_Unknown;

( m_choice != index )

ThrowInvalidSelection(index);

DoSelect(index, pool);

Select(index, reset, 0);

m_choice == e_Val;

CheckSelected(e_Val);

m_choice == e_Plus_unknown;

m_choice == e_Minus_unknown;

( m_choice != index )

ThrowInvalidSelection(index);

DoSelect(index, pool);

Select(index, reset, 0);

m_choice == e_Five_prime;

m_choice == e_Three_prime;

.NotEmpty();

.NotEmpty();

User-defined methods of the data storage class.

Base class for all serializable objects.

unsigned int TSeqPos

Type for sequence locations and lengths.

int TSignedSeqPos

Type for signed sequence position.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsUnknown(void) const

Check if variant Unknown is selected.

TSeqtype & SetSeqtype(void)

Assign a value to Seqtype data member.

bool IsMinus_unknown(void) const

Check if variant Minus_unknown is selected.

bool IsSetStrand_minus(void) const

TRUE implies opposite transcriptional orientation to to the reference sequence Check if a value has b...

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

bool IsSetBase(void) const

Check if a value has been assigned to Base data member.

void SetMinus_unknown(void)

Select the variant.

void SetFive_prime(void)

Select the variant.

DECLARE_INTERNAL_TYPE_INFO()

E_Choice

Choice variants.

bool CanGetBase(void) const

Check if it is safe to call GetBase method.

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

static const char *const sm_SelectionNames[]

bool IsSetSeqid(void) const

Check if a value has been assigned to Seqid data member.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

bool CanGetSeqtype(void) const

Check if it is safe to call GetSeqtype method.

TOffset & SetOffset(void)

Assign a value to Offset data member.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

TFuzzy & SetFuzzy(void)

Assign a value to Fuzzy data member.

void ResetSelection(void)

Reset the selection (set it to e_not_set).

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

CNtSite_Base(const CNtSite_Base &)

const TOffset & GetOffset(void) const

Get the Offset member data.

void ResetFuzzy_offset(void)

Reset Fuzzy_offset data member.

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

void ResetSelection(void)

Reset the selection (set it to e_not_set).

TFuzzy GetFuzzy(void) const

Get the Fuzzy member data.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

void Reset(void)

Reset the whole object.

TSeqid & SetSeqid(void)

Assign a value to Seqid data member.

void SetDefaultFuzzy_offset(void)

Assign default value to Fuzzy_offset data member.

void ResetBase(void)

Reset Base data member.

const TSeqid & GetSeqid(void) const

Get the Seqid member data.

void ResetSelection(void)

Reset the selection (set it to e_not_set).

void ResetUtr(void)

Reset Utr data member.

CNtSite_Base & operator=(const CNtSite_Base &)

void ResetSeqid(void)

Reset Seqid data member.

void Reset(void)

Reset the whole object.

void SetUnknown(void)

Select the variant.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

bool IsVal(void) const

Check if variant Val is selected.

bool CanGetSeqid(void) const

Check if it is safe to call GetSeqid method.

TUtr & SetUtr(void)

Assign a value to Utr data member.

TSeqtype GetSeqtype(void) const

Get the Seqtype member data.

const TBase & GetBase(void) const

Get the Base member data.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

TStrand_minus GetStrand_minus(void) const

Get the Strand_minus member data.

E_Choice Which(void) const

Which variant is currently selected.

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

Tparent::CMemberIndex< E_memberIndex, 9 > TmemberIndex

E_Choice Which(void) const

Which variant is currently selected.

TVal & SetVal(void)

Select the variant.

void Select(E_Choice index, EResetVariant reset, CObjectMemoryPool *pool)

Select the requested variant if needed, allocating CObject variants from memory pool.

C_Offset(const C_Offset &)

void ResetOffset(void)

Reset Offset data member.

DECLARE_INTERNAL_TYPE_INFO()

DECLARE_INTERNAL_TYPE_INFO()

TFuzzy_offset GetFuzzy_offset(void) const

Get the Fuzzy_offset member data.

TVal GetVal(void) const

Get the variant data.

E_Choice Which(void) const

Which variant is currently selected.

bool IsSetSeqtype(void) const

Check if a value has been assigned to Seqtype data member.

void ResetFuzzy(void)

Reset Fuzzy data member.

bool IsThree_prime(void) const

Check if variant Three_prime is selected.

bool IsSetUtr(void) const

Check if a value has been assigned to Utr data member.

bool IsPlus_unknown(void) const

Check if variant Plus_unknown is selected.

bool IsSetFuzzy(void) const

TRUE implies HGVS subexpression of the form (base + offset), Check if a value has been assigned to Fu...

C_Offset & operator=(const C_Offset &)

bool CanGetFuzzy_offset(void) const

Check if it is safe to call GetFuzzy_offset method.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

bool CanGetOffset(void) const

Check if it is safe to call GetOffset method.

bool IsFive_prime(void) const

Check if variant Five_prime is selected.

bool CanGetUtr(void) const

Check if it is safe to call GetUtr method.

void SetDefaultStrand_minus(void)

Assign default value to Strand_minus data member.

virtual void Reset(void)

Reset the whole object.

TBase & SetBase(void)

Assign a value to Base data member.

TStrand_minus & SetStrand_minus(void)

Assign a value to Strand_minus data member.

TVal & SetVal(void)

Select the variant.

bool IsSetOffset(void) const

Check if a value has been assigned to Offset data member.

virtual ~CNtSite_Base(void)

E_ChoiceStopper

Maximum+1 value of the choice variant enumerator.

E_Choice

Choice variants.

C_Base & operator=(const C_Base &)

void Reset(void)

Reset the whole object.

static const char *const sm_SelectionNames[]

void SetPlus_unknown(void)

Select the variant.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

TVal GetVal(void) const

Get the variant data.

void SetThree_prime(void)

Select the variant.

bool IsSetFuzzy_offset(void) const

TRUE implies HGVS subexpression of the form base+(offset) Check if a value has been assigned to Fuzzy...

bool IsVal(void) const

Check if variant Val is selected.

bool CanGetStrand_minus(void) const

Check if it is safe to call GetStrand_minus method.

TFuzzy_offset & SetFuzzy_offset(void)

Assign a value to Fuzzy_offset data member.

static const char *const sm_SelectionNames[]

bool CanGetFuzzy(void) const

Check if it is safe to call GetFuzzy method.

DECLARE_INTERNAL_TYPE_INFO()

void ResetStrand_minus(void)

Reset Strand_minus data member.

void ResetSeqtype(void)

Reset Seqtype data member.

C_Utr & operator=(const C_Utr &)

E_Choice

Choice variants.

const TUtr & GetUtr(void) const

Get the Utr member data.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

void SetDefaultFuzzy(void)

Assign default value to Fuzzy data member.

@ e_MaxChoice

== e_Unknown+1

@ e_not_set

No variant selected.

@ e_MaxChoice

== e_Three_prime+1

@ e_MaxChoice

== e_Minus_unknown+1

@ e_not_set

No variant selected.

@ e_not_set

No variant selected.

unsigned int

A callback function used to compare two keys in a database.

const GenericPointer< typename T::ValueType > T2 value

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