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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/NSeq_8hpp_source.html below:

NCBI C++ ToolKit: src/algo/align/prosplign/NSeq.hpp Source File

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vector<char>

;

(

& fullseq,

vector<pair<int, int> >& igi);

(

pos)

;

(NSEQ::size_type j)

{

[j]; }

(

pos)

{

pos >= 0 && pos < (

)

.size(); }

USING_SCOPE(ncbi::objects)

int operator[](NSEQ::size_type j) const

CNSeq(CScope &scope, CSeq_loc &genomic)

CNSeq operator=(const CNSeq &)

void Init(CScope &scope, CSeq_loc &genomic)

int GetNuc(NSEQ::size_type j) const

bool ValidPos(int pos) const

char Upper(int pos) const

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

unsigned int

A callback function used to compare two keys in a database.

Magic spell ;-) needed for some weird compilers... very empiric.

The NCBI C++/STL use hints.

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