Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/NSeq_8cpp_source.html below:

NCBI C++ ToolKit: src/algo/align/prosplign/NSeq.cpp Source File

NSEQ::const_iterator beg, end;

beg = fullseq.

.begin();

(vector<pair<int, int> >::const_iterator it = igi.begin(); it != igi.end(); ++it) {

end = fullseq.

.begin() + it->first;

.insert(

.end(), beg, end);

beg = end + it->second;

(beg < fullseq.

.end())

.insert(

.end(), beg, fullseq.

.end());

extended_seqloc->

(genomic);

(extended_seqloc.

() || extended_seqloc->

() || extended_seqloc->

() ) {

extended_seqloc->

(*seqid);

genomic.

(*extended_seqloc);

pos0 = pos < 3 ? 0 : pos - 3;

USING_SCOPE(ncbi::objects)

bool IsForward(ENa_strand s)

void Init(CScope &scope, CSeq_loc &genomic)

char Upper(int pos) const

static char NucToChar(int n)

Include a standard set of the NCBI C++ Toolkit most basic headers.

static TDSRET convert(TDSSOCKET *tds, TDSICONV *conv, TDS_ICONV_DIRECTION direction, const char *from, size_t from_len, char *dest, size_t *dest_len)

unsigned int TSeqPos

Type for sequence locations and lengths.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Optimized implementation of CSerialObject::Assign, which is not so efficient.

ENa_strand GetStrand(void) const

Get the location's strand.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Override Assign() to incorporate cache invalidation.

void SetId(CSeq_id &id)

set the 'id' field in all parts of this location

const CSeq_id * GetId(void) const

Get the id of the location return NULL if has multiple ids or no id at all.

TSeqPos GetStop(const CSeq_loc &loc, CScope *scope, ESeqLocExtremes ext=eExtreme_Positional)

If only one CBioseq is represented by CSeq_loc, returns the position at the stop of the location.

TSeqPos GetLength(const CSeq_id &id, CScope *scope)

Get sequence length if scope not null, else return max possible TSeqPos.

TSeqPos GetStart(const CSeq_loc &loc, CScope *scope, ESeqLocExtremes ext=eExtreme_Positional)

If only one CBioseq is represented by CSeq_loc, returns the position at the start of the location.

CRef< CSeq_loc > Seq_loc_Subtract(const CSeq_loc &loc1, const CSeq_loc &loc2, CSeq_loc::TOpFlags flags, CScope *scope)

Subtract the second seq-loc from the first one.

CRef< CSeq_loc > Seq_loc_Add(const CSeq_loc &loc1, const CSeq_loc &loc2, CSeq_loc::TOpFlags flags, CScope *scope)

Add two seq-locs.

@ eCoding_Ncbi

Set coding to binary coding (Ncbi4na or Ncbistdaa)

bool Empty(void) const THROWS_NONE

Check if CRef is empty – not pointing to any object, which means having a null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define END_SCOPE(ns)

End the previously defined scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define BEGIN_SCOPE(ns)

Define a new scope.

bool IsEmpty(void) const

Check if variant Empty is selected.

bool IsNull(void) const

Check if variant Null is selected.

Magic spell ;-) needed for some weird compilers... very empiric.

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4