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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/MolInfo___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seq/MolInfo_.hpp Source File

41 #ifndef OBJECTS_SEQ_MOLINFO_BASE_HPP 42 #define OBJECTS_SEQ_MOLINFO_BASE_HPP 52 #ifndef BEGIN_objects_SCOPE 53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 54 # define END_objects_SCOPE END_SCOPE(objects) 109

eBiomol_other_genetic = 9,

110

eBiomol_genomic_mRNA = 10,

113

eBiomol_transcribed_RNA = 13,

131

eTech_concept_trans = 8,

134

eTech_seq_pept_overlap = 11,

135

eTech_seq_pept_homol = 12,

136

eTech_concept_trans_a = 13,

145

eTech_composite_wgs_htgs = 22,

155

eCompleteness_unknown = 0,

156

eCompleteness_complete = 1,

157

eCompleteness_partial = 2,

158

eCompleteness_no_left = 3,

159

eCompleteness_no_right = 4,

160

eCompleteness_no_ends = 5,

161

eCompleteness_has_left = 6,

162

eCompleteness_has_right = 7,

163

eCompleteness_other = 255

197  bool

IsSetBiomol(

void

)

const

;

204  bool

CanGetBiomol(

void

)

const

;

207  void

ResetBiomol(

void

);

210  void

SetDefaultBiomol(

void

);

216  TBiomol

GetBiomol(

void

)

const

;

237  bool

IsSetTech(

void

)

const

;

244  bool

CanGetTech(

void

)

const

;

247  void

ResetTech(

void

);

250  void

SetDefaultTech(

void

);

256  TTech

GetTech(

void

)

const

;

284  bool

IsSetTechexp(

void

)

const

;

291  bool

CanGetTechexp(

void

)

const

;

294  void

ResetTechexp(

void

);

300  const TTechexp

& GetTechexp(

void

)

const

;

322  bool

IsSetCompleteness(

void

)

const

;

329  bool

CanGetCompleteness(

void

)

const

;

332  void

ResetCompleteness(

void

);

335  void

SetDefaultCompleteness(

void

);

363  bool

IsSetGbmoltype(

void

)

const

;

370  bool

CanGetGbmoltype(

void

)

const

;

373  void

ResetGbmoltype(

void

);

379  const TGbmoltype

& GetGbmoltype(

void

)

const

;

395  virtual void

Reset(

void

);

******* NOTE: * mol-type, modif, method, and org are consolidated and expanded * in Org-ref,...

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const TGbmoltype & GetGbmoltype(void) const

Get the Gbmoltype member data.

bool IsSetCompleteness(void) const

Check if a value has been assigned to Completeness data member.

bool CanGetBiomol(void) const

Check if it is safe to call GetBiomol method.

bool CanGetTechexp(void) const

Check if it is safe to call GetTechexp method.

TTech & SetTech(void)

Assign a value to Tech data member.

Tparent::CMemberIndex< E_memberIndex, 6 > TmemberIndex

bool IsSetTechexp(void) const

explanation if tech not enough

bool CanGetGbmoltype(void) const

Check if it is safe to call GetGbmoltype method.

void ResetCompleteness(void)

Reset Completeness data member.

bool IsSetBiomol(void) const

Check if a value has been assigned to Biomol data member.

TTech GetTech(void) const

Get the Tech member data.

TTechexp & SetTechexp(void)

Assign a value to Techexp data member.

TBiomol & SetBiomol(void)

Assign a value to Biomol data member.

const TTechexp & GetTechexp(void) const

Get the Techexp member data.

TGbmoltype & SetGbmoltype(void)

Assign a value to Gbmoltype data member.

void ResetTech(void)

Reset Tech data member.

DECLARE_INTERNAL_TYPE_INFO()

TCompleteness & SetCompleteness(void)

Assign a value to Completeness data member.

TBiomol GetBiomol(void) const

Get the Biomol member data.

void ResetBiomol(void)

Reset Biomol data member.

CMolInfo_Base & operator=(const CMolInfo_Base &)

bool IsSetTech(void) const

Check if a value has been assigned to Tech data member.

bool CanGetTech(void) const

Check if it is safe to call GetTech method.

TCompleteness GetCompleteness(void) const

Get the Completeness member data.

void SetDefaultTech(void)

Assign default value to Tech data member.

bool CanGetCompleteness(void) const

Check if it is safe to call GetCompleteness method.

void SetDefaultBiomol(void)

Assign default value to Biomol data member.

void SetDefaultCompleteness(void)

Assign default value to Completeness data member.

CMolInfo_Base(const CMolInfo_Base &)

bool IsSetGbmoltype(void) const

identifies particular ncRNA Check if a value has been assigned to Gbmoltype data member.

const GenericPointer< typename T::ValueType > T2 value

void SetTech(CRef< objects::CSeq_entry > entry, objects::CMolInfo::TTech tech)

void SetCompleteness(CRef< objects::CSeq_entry > entry, objects::CMolInfo::TCompleteness completeness)

void SetBiomol(CRef< objects::CSeq_entry > entry, objects::CMolInfo::TBiomol biomol)


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