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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Markov__chain__array___8hpp_source.html below:

NCBI C++ ToolKit: include/algo/gnomon/Markov_chain_array_.hpp Source File

41 #ifndef ALGO_GNOMON_MARKOV_CHAIN_ARRAY_BASE_HPP 42 #define ALGO_GNOMON_MARKOV_CHAIN_ARRAY_BASE_HPP 52 #ifndef BEGIN_objects_SCOPE 53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 54 # define END_objects_SCOPE END_SCOPE(objects) 91  typedef

list< CRef< CMarkov_chain_params > >

TMatrix

;

112  bool

IsSetIn_exon(

void

)

const

;

119  bool

CanGetIn_exon(

void

)

const

;

122  void

ResetIn_exon(

void

);

149  bool

IsSetIn_intron(

void

)

const

;

156  bool

CanGetIn_intron(

void

)

const

;

159  void

ResetIn_intron(

void

);

187  bool

IsSetMatrix(

void

)

const

;

194  bool

CanGetMatrix(

void

)

const

;

197  void

ResetMatrix(

void

);

203  const TMatrix

& GetMatrix(

void

)

const

;

212  virtual void

Reset(

void

);

CMarkov_chain_array_Base –.

CMarkov_chain_params –.

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_XALGOGNOMON_EXPORT

bool CanGetIn_exon(void) const

Check if it is safe to call GetIn_exon method.

CMarkov_chain_array_Base & operator=(const CMarkov_chain_array_Base &)

TMatrix & SetMatrix(void)

Assign a value to Matrix data member.

void ResetIn_exon(void)

Reset In_exon data member.

bool CanGetIn_intron(void) const

Check if it is safe to call GetIn_intron method.

TIn_intron GetIn_intron(void) const

Get the In_intron member data.

void ResetIn_intron(void)

Reset In_intron data member.

TIn_exon GetIn_exon(void) const

Get the In_exon member data.

TIn_intron & SetIn_intron(void)

Assign a value to In_intron data member.

bool IsSetIn_exon(void) const

Check if a value has been assigned to In_exon data member.

list< CRef< CMarkov_chain_params > > TMatrix

bool IsSetMatrix(void) const

in-exon+in-intron elements Check if a value has been assigned to Matrix data member.

bool CanGetMatrix(void) const

Check if it is safe to call GetMatrix method.

CMarkov_chain_array_Base(const CMarkov_chain_array_Base &)

bool IsSetIn_intron(void) const

Check if a value has been assigned to In_intron data member.

TIn_exon & SetIn_exon(void)

Assign a value to In_exon data member.

DECLARE_INTERNAL_TYPE_INFO()

const TMatrix & GetMatrix(void) const

Get the Matrix member data.

list< CRef< CMarkov_chain_params > > m_Matrix

Tparent::CMemberIndex< E_memberIndex, 4 > TmemberIndex

const GenericPointer< typename T::ValueType > T2 value


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