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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/MSPepHit___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/omssa/MSPepHit_.hpp Source File

IsSetStart(

)

;

CanGetStart(

)

;

ResetStart(

);

& SetStart(

);

IsSetStop(

)

;

CanGetStop(

)

;

ResetStop(

);

& SetStop(

);

IsSetGi(

)

;

CanGetGi(

)

;

ResetGi(

);

GetGi(

)

;

IsSetAccession(

)

;

CanGetAccession(

)

;

ResetAccession(

);

IsSetDefline(

)

;

CanGetDefline(

)

;

ResetDefline(

);

& GetDefline(

)

;

IsSetProtlength(

)

;

CanGetProtlength(

)

;

ResetProtlength(

);

IsSetOid(

)

;

CanGetOid(

)

;

ResetOid(

);

GetOid(

)

;

& SetOid(

);

IsSetReversed(

)

;

CanGetReversed(

)

;

ResetReversed(

);

IsSetPepstart(

)

;

CanGetPepstart(

)

;

ResetPepstart(

);

& GetPepstart(

)

;

IsSetPepstop(

)

;

CanGetPepstop(

)

;

ResetPepstop(

);

& GetPepstop(

)

;

Reset(

);

&

(

);

&

(

);

contains information about sequences with identical peptide sequences

Base class for all serializable objects.

CStrictId< SStrictId_Gi, SStrictId_Gi::TId > TGi

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

static string UnassignedString(void)

TSeqPos GetStop(const CSeq_loc &loc, CScope *scope, ESeqLocExtremes ext=eExtreme_Positional)

If only one CBioseq is represented by CSeq_loc, returns the position at the stop of the location.

TSeqPos GetStart(const CSeq_loc &loc, CScope *scope, ESeqLocExtremes ext=eExtreme_Positional)

If only one CBioseq is represented by CSeq_loc, returns the position at the start of the location.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_OMSSA_EXPORT

bool CanGetPepstop(void) const

Check if it is safe to call GetPepstop method.

TProtlength GetProtlength(void) const

Get the Protlength member data.

bool IsSetOid(void) const

blast library oid Check if a value has been assigned to Oid data member.

bool IsSetReversed(void) const

reversed sequence Check if a value has been assigned to Reversed data member.

TReversed GetReversed(void) const

Get the Reversed member data.

bool IsSetGi(void) const

genbank identifier Check if a value has been assigned to Gi data member.

void ResetGi(void)

Reset Gi data member.

bool CanGetDefline(void) const

Check if it is safe to call GetDefline method.

bool CanGetProtlength(void) const

Check if it is safe to call GetProtlength method.

const TAccession & GetAccession(void) const

Get the Accession member data.

bool IsSetStart(void) const

start position (inclusive) in sequence Check if a value has been assigned to Start data member.

bool IsSetStop(void) const

stop position (inclusive) in sequence Check if a value has been assigned to Stop data member.

TAccession & SetAccession(void)

Assign a value to Accession data member.

bool IsSetPepstop(void) const

AA after the peptide Check if a value has been assigned to Pepstop data member.

TStop & SetStop(void)

Assign a value to Stop data member.

CMSPepHit_Base(const CMSPepHit_Base &)

bool CanGetAccession(void) const

Check if it is safe to call GetAccession method.

TGi GetGi(void) const

Get the Gi member data.

bool CanGetOid(void) const

Check if it is safe to call GetOid method.

const TPepstop & GetPepstop(void) const

Get the Pepstop member data.

TStart GetStart(void) const

Get the Start member data.

Tparent::CMemberIndex< E_memberIndex, 11 > TmemberIndex

bool IsSetPepstart(void) const

AA before the peptide Check if a value has been assigned to Pepstart data member.

TPepstart & SetPepstart(void)

Assign a value to Pepstart data member.

bool CanGetPepstart(void) const

Check if it is safe to call GetPepstart method.

TPepstop & SetPepstop(void)

Assign a value to Pepstop data member.

TOid GetOid(void) const

Get the Oid member data.

CMSPepHit_Base & operator=(const CMSPepHit_Base &)

bool CanGetGi(void) const

Check if it is safe to call GetGi method.

DECLARE_INTERNAL_TYPE_INFO()

bool CanGetStart(void) const

Check if it is safe to call GetStart method.

TProtlength & SetProtlength(void)

Assign a value to Protlength data member.

void ResetStart(void)

Reset Start data member.

void ResetOid(void)

Reset Oid data member.

TDefline & SetDefline(void)

Assign a value to Defline data member.

bool CanGetStop(void) const

Check if it is safe to call GetStop method.

bool IsSetAccession(void) const

sequence accession Check if a value has been assigned to Accession data member.

TStop GetStop(void) const

Get the Stop member data.

bool IsSetProtlength(void) const

length of protein Check if a value has been assigned to Protlength data member.

TGi & SetGi(void)

Assign a value to Gi data member.

bool IsSetDefline(void) const

sequence description Check if a value has been assigned to Defline data member.

const TDefline & GetDefline(void) const

Get the Defline member data.

TReversed & SetReversed(void)

Assign a value to Reversed data member.

TStart & SetStart(void)

Assign a value to Start data member.

TOid & SetOid(void)

Assign a value to Oid data member.

void ResetReversed(void)

Reset Reversed data member.

void ResetStop(void)

Reset Stop data member.

const TPepstart & GetPepstart(void) const

Get the Pepstart member data.

void ResetProtlength(void)

Reset Protlength data member.

bool CanGetReversed(void) const

Check if it is safe to call GetReversed method.

const GenericPointer< typename T::ValueType > T2 value

const CConstRef< CSeq_id > GetAccession(const CSeq_id_Handle &id_handle)

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