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NCBI C++ ToolKit: include/objects/omssa/MSModSpecSet.hpp Source File

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39 #ifndef OBJECTS_OMSSA_MSMODSPECSET_HPP 40 #define OBJECTS_OMSSA_MSMODSPECSET_HPP 67 void

CreateArrays(

void

);

70 bool

IsArrayed(

void

);

77 char

GetModChar(

int

Mod,

int

Number)

const

;

83 int

GetModNumChars(

int

Mod)

const

;

89 int

GetModMass(

int

Mod)

const

;

96 int

GetNeutralLoss(

int

Mod)

const

;

102 const char

* GetModName(

int

Mod)

const

;

108 const char

* GetUnimodName(

int

Mod)

const

;

117 static const int

kMaxNameSize = 128;

120 static const int

kMaxAAs = 3;

Holds a set of modifications.

@MSModSpecSet.hpp User-defined methods of the data storage class.

CMSModSpecSet & operator=(const CMSModSpecSet &value)

int GetNeutralLoss(int Mod) const

get neutral loss

const char * GetModName(int Mod) const

get modification friendly name

const char * GetUnimodName(int Mod) const

get unimod name

char ModChar[eMSMod_max][kMaxAAs]

the AA's affected

int NeutralLoss[eMSMod_max]

the integer scaled mass of the neutral loss

int NumModChars[eMSMod_max]

the number of AA's affected

bool IsArrayed(void)

Have the arrays been intialized?

EMSModType ModTypes[eMSMod_max]

categorizes existing mods as the types EMSModType

int ModMass[eMSMod_max]

the integer scaled mass of the mod

int GetModNumChars(int Mod) const

get the number of modification AA's

char ModNames[eMSMod_max][kMaxNameSize]

friendly names

bool isArrayed

Have the arrays been intialized?

CMSModSpecSet(const CMSModSpecSet &value)

char GetModChar(int Mod, int Number) const

get modification AA's

EMSModType GetModType(int Mod) const

get modification type

int GetModMass(int Mod) const

get modification mass

CMSModSpecSet_Base Tparent

char UnimodNames[eMSMod_max][kMaxNameSize]

friendly names

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_OMSSA_EXPORT

EMSModType

enumerate modification types

@ eMSMod_max

maximum number of mods

const GenericPointer< typename T::ValueType > T2 value

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