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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/MSModSpecSet_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/omssa/MSModSpecSet.cpp Source File

45 #define NCBI_USE_ERRCODE_X Objects_Omssa 65

Tdata::const_iterator iMods;

66  for

(iMods =

Get

().begin(); iMods !=

Get

().end(); ++iMods) {

67  int

ModNum = (*iMods)->GetMod();

70  "CMSModSpecSet::CreateArrays modification number unknown"

);

74  if

((*iMods)->GetMonomass() == 0.0) {

82  if

((*iMods)->CanGetNeutralloss())

84

((*iMods)->GetMonomass() -

85

(*iMods)->GetNeutralloss().GetMonomass());

93  if

((*iMods)->CanGetPsi_ms()) {

103

CMSModSpec::TResidues::const_iterator iRes;

105  for

(iRes = (*iMods)->GetResidues().begin(); iRes != (*iMods)->GetResidues().end(); ++iRes) {

108  "CMSModSpecSet::CreateArrays too many AAs in mod "

<<

112  if

(strchr(

UniqueAA

, (*iRes)[0]) != 0)

116  "CMSModSpecSet::CreateArrays unknown AA "

<<

117

(*iRes) <<

" specified for mod "

<< ModNum);

131

CMSModSpecSet::Tdata::const_iterator

i

;

133  for

(

i

= ModsIn.

Get

().begin();

i

!= ModsIn.

Get

().end(); ++

i

) {

134  Set

().push_back(*

i

);

144 #undef NCBI_USE_ERRCODE_X

const char *const UniqueAA

@MSModSpecSet.hpp User-defined methods of the data storage class.

static const int kMaxNameSize

the maximum size of an modification friendly name

char ModChar[eMSMod_max][kMaxAAs]

the AA's affected

void Append(const CMSModSpecSet &ModsIn)

concatenates in another CMSModSpecSet

int NeutralLoss[eMSMod_max]

the integer scaled mass of the neutral loss

int NumModChars[eMSMod_max]

the number of AA's affected

EMSModType ModTypes[eMSMod_max]

categorizes existing mods as the types EMSModType

int ModMass[eMSMod_max]

the integer scaled mass of the mod

void CreateArrays(void)

creates arrays for the existing set

char ModNames[eMSMod_max][kMaxNameSize]

friendly names

bool isArrayed

Have the arrays been intialized?

static const int kMaxAAs

the maximum number of AA's a modification can affect

char UnimodNames[eMSMod_max][kMaxNameSize]

friendly names

#define ERR_POST_X(err_subcode, message)

Error posting with default error code and given error subcode.

void Warning(CExceptionArgs_Base &args)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

Tdata & Set(void)

Assign a value to data member.

const Tdata & Get(void) const

Get the member data.

bool CanGet(void) const

Check if it is safe to call Get method.

EMSModType

enumerate modification types

@ eMSMod_max

maximum number of mods

Definition of all error codes used in objects libraries.

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