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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/MSHits___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/omssa/MSHits_.hpp Source File

list< CRef< CMSMZHit > >

;

list< CRef< CMSModHit > >

;

IsSetEvalue(

)

;

CanGetEvalue(

)

;

ResetEvalue(

);

GetEvalue(

)

;

IsSetPvalue(

)

;

CanGetPvalue(

)

;

ResetPvalue(

);

GetPvalue(

)

;

IsSetCharge(

)

;

CanGetCharge(

)

;

ResetCharge(

);

IsSetPephits(

)

;

CanGetPephits(

)

;

ResetPephits(

);

& GetPephits(

)

;

IsSetMzhits(

)

;

CanGetMzhits(

)

;

ResetMzhits(

);

& GetMzhits(

)

;

IsSetPepstring(

)

;

CanGetPepstring(

)

;

ResetPepstring(

);

& GetPepstring(

)

;

IsSetMass(

)

;

CanGetMass(

)

;

ResetMass(

);

GetMass(

)

;

& SetMass(

);

IsSetMods(

)

;

CanGetMods(

)

;

ResetMods(

);

& GetMods(

)

;

& SetMods(

);

IsSetPepstart(

)

;

CanGetPepstart(

)

;

ResetPepstart(

);

& GetPepstart(

)

;

IsSetPepstop(

)

;

CanGetPepstop(

)

;

ResetPepstop(

);

& GetPepstop(

)

;

IsSetProtlength(

)

;

CanGetProtlength(

)

;

ResetProtlength(

);

IsSetTheomass(

)

;

CanGetTheomass(

)

;

ResetTheomass(

);

IsSetOid(

)

;

CanGetOid(

)

;

ResetOid(

);

GetOid(

)

;

& SetOid(

);

IsSetScores(

)

;

CanGetScores(

)

;

ResetScores(

);

& GetScores(

)

;

IsSetLibaccession(

)

;

CanGetLibaccession(

)

;

ResetLibaccession(

);

Reset(

);

void SetScores(objects::CSeq_align &seq_align, objects::CScope &scope, const string &matrix_name="BLOSUM62")

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_OMSSA_EXPORT

list< CRef< CMSScoreSet > > TScores

list< CRef< CMSMZHit > > TMzhits

bool CanGetTheomass(void) const

Check if it is safe to call GetTheomass method.

bool IsSetPephits(void) const

peptides that match this hit Check if a value has been assigned to Pephits data member.

bool IsSetTheomass(void) const

scaled theoretical mass of peptide hit Check if a value has been assigned to Theomass data member.

TPvalue GetPvalue(void) const

Get the Pvalue member data.

bool IsSetCharge(void) const

the charge state used in search.

TProtlength & SetProtlength(void)

Assign a value to Protlength data member.

TMods & SetMods(void)

Assign a value to Mods data member.

void ResetTheomass(void)

Reset Theomass data member.

TScores & SetScores(void)

Assign a value to Scores data member.

TLibaccession & SetLibaccession(void)

Assign a value to Libaccession data member.

bool IsSetProtlength(void) const

length of protein hit (depricated) Check if a value has been assigned to Protlength data member.

TPepstring & SetPepstring(void)

Assign a value to Pepstring data member.

list< CRef< CMSModHit > > m_Mods

const TScores & GetScores(void) const

Get the Scores member data.

const TPephits & GetPephits(void) const

Get the Pephits member data.

void ResetEvalue(void)

Reset Evalue data member.

bool CanGetMods(void) const

Check if it is safe to call GetMods method.

Tparent::CMemberIndex< E_memberIndex, 16 > TmemberIndex

TCharge GetCharge(void) const

Get the Charge member data.

CMSHits_Base(const CMSHits_Base &)

TMass & SetMass(void)

Assign a value to Mass data member.

list< CRef< CMSPepHit > > m_Pephits

bool IsSetLibaccession(void) const

library search accesssion Check if a value has been assigned to Libaccession data member.

list< CRef< CMSModHit > > TMods

CMSHits_Base & operator=(const CMSHits_Base &)

bool CanGetPepstring(void) const

Check if it is safe to call GetPepstring method.

bool IsSetMods(void) const

modifications to sequence Check if a value has been assigned to Mods data member.

bool CanGetCharge(void) const

Check if it is safe to call GetCharge method.

list< CRef< CMSMZHit > > m_Mzhits

TOid GetOid(void) const

Get the Oid member data.

TPvalue & SetPvalue(void)

Assign a value to Pvalue data member.

bool CanGetPepstart(void) const

Check if it is safe to call GetPepstart method.

TProtlength GetProtlength(void) const

Get the Protlength member data.

const TPepstart & GetPepstart(void) const

Get the Pepstart member data.

DECLARE_INTERNAL_TYPE_INFO()

TMass GetMass(void) const

Get the Mass member data.

bool CanGetPepstop(void) const

Check if it is safe to call GetPepstop method.

bool IsSetMass(void) const

scaled experimental mass of peptide in Da Check if a value has been assigned to Mass data member.

bool IsSetScores(void) const

optional scores (for library search) Check if a value has been assigned to Scores data member.

const TMzhits & GetMzhits(void) const

Get the Mzhits member data.

const TPepstring & GetPepstring(void) const

Get the Pepstring member data.

TPepstop & SetPepstop(void)

Assign a value to Pepstop data member.

list< CRef< CMSScoreSet > > m_Scores

TMzhits & SetMzhits(void)

Assign a value to Mzhits data member.

const TLibaccession & GetLibaccession(void) const

Get the Libaccession member data.

const TMods & GetMods(void) const

Get the Mods member data.

TCharge & SetCharge(void)

Assign a value to Charge data member.

TEvalue GetEvalue(void) const

Get the Evalue member data.

void ResetCharge(void)

Reset Charge data member.

bool CanGetProtlength(void) const

Check if it is safe to call GetProtlength method.

void ResetOid(void)

Reset Oid data member.

bool CanGetEvalue(void) const

Check if it is safe to call GetEvalue method.

bool CanGetPephits(void) const

Check if it is safe to call GetPephits method.

bool CanGetPvalue(void) const

Check if it is safe to call GetPvalue method.

bool IsSetMzhits(void) const

ions hit Check if a value has been assigned to Mzhits data member.

bool CanGetMzhits(void) const

Check if it is safe to call GetMzhits method.

bool CanGetMass(void) const

Check if it is safe to call GetMass method.

void ResetProtlength(void)

Reset Protlength data member.

void ResetMass(void)

Reset Mass data member.

bool IsSetEvalue(void) const

E-value (expect value) Check if a value has been assigned to Evalue data member.

bool CanGetScores(void) const

Check if it is safe to call GetScores method.

bool IsSetOid(void) const

blast library oid (depricated) Check if a value has been assigned to Oid data member.

bool CanGetOid(void) const

Check if it is safe to call GetOid method.

bool IsSetPvalue(void) const

P-value (probability value) Check if a value has been assigned to Pvalue data member.

TTheomass GetTheomass(void) const

Get the Theomass member data.

void ResetPvalue(void)

Reset Pvalue data member.

const TPepstop & GetPepstop(void) const

Get the Pepstop member data.

bool CanGetLibaccession(void) const

Check if it is safe to call GetLibaccession method.

TEvalue & SetEvalue(void)

Assign a value to Evalue data member.

TOid & SetOid(void)

Assign a value to Oid data member.

bool IsSetPepstart(void) const

AA before the peptide (depricated) Check if a value has been assigned to Pepstart data member.

list< CRef< CMSPepHit > > TPephits

TTheomass & SetTheomass(void)

Assign a value to Theomass data member.

bool IsSetPepstop(void) const

AA after the peptide (depricated) Check if a value has been assigned to Pepstop data member.

TPepstart & SetPepstart(void)

Assign a value to Pepstart data member.

bool IsSetPepstring(void) const

the peptide sequence Check if a value has been assigned to Pepstring data member.

TPephits & SetPephits(void)

Assign a value to Pephits data member.

const GenericPointer< typename T::ValueType > T2 value

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