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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/MSHitSet___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/omssa/MSHitSet_.hpp Source File

41 #ifndef OBJECTS_OMSSA_MSHITSET_BASE_HPP 42 #define OBJECTS_OMSSA_MSHITSET_BASE_HPP 56 #ifndef BEGIN_objects_SCOPE 57 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 58 # define END_objects_SCOPE END_SCOPE(objects) 97  typedef

vector< CRef< CMSHits > >

THits

;

98  typedef

list< string >

TIds

;

127  bool

IsSetNumber(

void

)

const

;

134  bool

CanGetNumber(

void

)

const

;

137  void

ResetNumber(

void

);

143  TNumber

GetNumber(

void

)

const

;

165  bool

IsSetError(

void

)

const

;

172  bool

CanGetError(

void

)

const

;

175  void

ResetError(

void

);

181  TError

GetError(

void

)

const

;

193  TError

& SetError(

void

);

203  bool

IsSetHits(

void

)

const

;

210  bool

CanGetHits(

void

)

const

;

213  void

ResetHits(

void

);

219  const THits

& GetHits(

void

)

const

;

225  THits

& SetHits(

void

);

235  bool

IsSetIds(

void

)

const

;

242  bool

CanGetIds(

void

)

const

;

245  void

ResetIds(

void

);

257  TIds

& SetIds(

void

);

267  bool

IsSetNamevalue(

void

)

const

;

274  bool

CanGetNamevalue(

void

)

const

;

277  void

ResetNamevalue(

void

);

283  const TNamevalue

& GetNamevalue(

void

)

const

;

299  bool

IsSetSettingid(

void

)

const

;

306  bool

CanGetSettingid(

void

)

const

;

309  void

ResetSettingid(

void

);

337  bool

IsSetUserannotation(

void

)

const

;

344  bool

CanGetUserannotation(

void

)

const

;

347  void

ResetUserannotation(

void

);

368  virtual void

Reset(

void

);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

contains a set of hits to a single spectrum

@MSHits.hpp User-defined methods of the data storage class.

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_OMSSA_EXPORT

TError & SetError(void)

Assign a value to Error data member.

bool IsSetNumber(void) const

unique number of spectrum Check if a value has been assigned to Number data member.

CMSHitSet_Base & operator=(const CMSHitSet_Base &)

void ResetNumber(void)

Reset Number data member.

void ResetError(void)

Reset Error data member.

vector< CRef< CMSHits > > THits

const TNamevalue & GetNamevalue(void) const

Get the Namevalue member data.

list< CRef< CNameValue > > TNamevalue

bool CanGetIds(void) const

Check if it is safe to call GetIds method.

bool IsSetUserannotation(void) const

allows users to flag certain Check if a value has been assigned to Userannotation data member.

TNumber GetNumber(void) const

Get the Number member data.

bool IsSetSettingid(void) const

id of the search setting used Check if a value has been assigned to Settingid data member.

TSettingid GetSettingid(void) const

Get the Settingid member data.

TSettingid & SetSettingid(void)

Assign a value to Settingid data member.

TNamevalue & SetNamevalue(void)

Assign a value to Namevalue data member.

bool CanGetUserannotation(void) const

Check if it is safe to call GetUserannotation method.

bool CanGetError(void) const

Check if it is safe to call GetError method.

Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex

void ResetUserannotation(void)

Reset Userannotation data member.

TUserannotation GetUserannotation(void) const

Get the Userannotation member data.

vector< CRef< CMSHits > > m_Hits

DECLARE_INTERNAL_TYPE_INFO()

TIds & SetIds(void)

Assign a value to Ids data member.

bool CanGetNamevalue(void) const

Check if it is safe to call GetNamevalue method.

bool IsSetNamevalue(void) const

extra info: retention times, etc.

void ResetSettingid(void)

Reset Settingid data member.

bool CanGetNumber(void) const

Check if it is safe to call GetNumber method.

THits & SetHits(void)

Assign a value to Hits data member.

bool IsSetError(void) const

error, if any Check if a value has been assigned to Error data member.

bool IsSetHits(void) const

set of hit to spectrum Check if a value has been assigned to Hits data member.

bool IsSetIds(void) const

filenames or other ids of spectra searched Check if a value has been assigned to Ids data member.

bool CanGetHits(void) const

Check if it is safe to call GetHits method.

bool CanGetSettingid(void) const

Check if it is safe to call GetSettingid method.

TNumber & SetNumber(void)

Assign a value to Number data member.

TUserannotation & SetUserannotation(void)

Assign a value to Userannotation data member.

CMSHitSet_Base(const CMSHitSet_Base &)

const TIds & GetIds(void) const

Get the Ids member data.

TError GetError(void) const

Get the Error member data.

const THits & GetHits(void) const

Get the Hits member data.

list< CRef< CNameValue > > m_Namevalue

unsigned int

A callback function used to compare two keys in a database.

const GenericPointer< typename T::ValueType > T2 value

static bool GetIds(const T &d, set< string > &labels, const string name="", bool detect=false, bool found=false)


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