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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Location__constraint_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/macro/Location_constraint.cpp Source File

has_null =

;

num_intervals = 0;

(

sl_ci(seq_loc); sl_ci; ++ sl_ci) {

(!sl_ci.IsEmpty()) num_intervals ++;

(num_intervals == 1) {

(num_intervals > 1 && !has_null) {

(num_intervals > 1 && has_null) {

(feat_bioseq.

()) {

(feat_bioseq->

()) {

(feat_to.

()) {

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

@ eExtreme_Positional

numerical value

@ eExtreme_Biological

5' and 3'

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

TSeqPos GetLength(void) const

bool x_DoesBioseqMatchSequenceType(CConstRef< CBioseq > bioseq, const ESeqtype_constraint &seq_type) const

bool x_DoesLocationMatchTypeConstraint(const CSeq_loc &seq_loc) const

~CLocation_constraint(void)

bool Match(const CSeq_feat &feat, CConstRef< CSeq_feat > feat_to, CConstRef< CBioseq > feat_bioseq) const

bool x_DoesLocationMatchPartialnessConstraint(const CSeq_loc &loc) const

bool x_DoesLocationMatchDistanceConstraint(CConstRef< CBioseq > bioseq_hl, const CSeq_loc &loc) const

bool x_DoesStrandMatchConstraint(const CSeq_loc &loc) const

namespace ncbi::objects::

Seq-loc iterator class – iterates all intervals from a seq-loc in the correct order.

unsigned int TSeqPos

Type for sequence locations and lengths.

bool IsPartialStart(ESeqLocExtremes ext) const

check start or stop of location for e_Lim fuzz

ENa_strand GetStrand(void) const

Get the location's strand.

TSeqPos GetStart(ESeqLocExtremes ext) const

Return start and stop positions of the seq-loc.

bool IsSetStrand(EIsSetStrand flag=eIsSetStrand_Any) const

Check if strand is set for any/all part(s) of the seq-loc depending on the flag.

bool IsPartialStop(ESeqLocExtremes ext) const

TSeqPos GetStop(ESeqLocExtremes ext) const

bool Empty(void) const THROWS_NONE

Check if CConstRef is empty – not pointing to any object which means having a null value.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

bool IsSetLocation_type(void) const

Check if a value has been assigned to Location_type data member.

TStrand GetStrand(void) const

Get the Strand member data.

bool IsSetEnd3(void) const

Check if a value has been assigned to End3 data member.

bool IsSetPartial3(void) const

Check if a value has been assigned to Partial3 data member.

TPartial3 GetPartial3(void) const

Get the Partial3 member data.

ESeqtype_constraint

Access to ESeqtype_constraint's attributes (values, names) as defined in spec.

const TEnd5 & GetEnd5(void) const

Get the End5 member data.

TLocation_type GetLocation_type(void) const

Get the Location_type member data.

bool IsSetSeq_type(void) const

Check if a value has been assigned to Seq_type data member.

TSeq_type GetSeq_type(void) const

Get the Seq_type member data.

bool CanGetEnd5(void) const

Check if it is safe to call GetEnd5 method.

bool IsSetEnd5(void) const

Check if a value has been assigned to End5 data member.

TPartial5 GetPartial5(void) const

Get the Partial5 member data.

bool CanGetEnd3(void) const

Check if it is safe to call GetEnd3 method.

bool IsSetStrand(void) const

Check if a value has been assigned to Strand data member.

const TEnd3 & GetEnd3(void) const

Get the End3 member data.

bool IsSetPartial5(void) const

Check if a value has been assigned to Partial5 data member.

@ eStrand_constraint_plus

@ eStrand_constraint_minus

@ eSeqtype_constraint_any

@ eSeqtype_constraint_prot

@ eSeqtype_constraint_nuc

@ ePartial_constraint_complete

@ ePartial_constraint_partial

@ ePartial_constraint_either

@ eLocation_type_constraint_ordered

@ eLocation_type_constraint_joined

@ eLocation_type_constraint_any

@ eLocation_type_constraint_single_interval

@ e_not_set

No variant selected.

const TLocation & GetLocation(void) const

Get the Location member data.

E_Choice Which(void) const

Which variant is currently selected.

@ e_not_set

No variant selected.

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