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NCBI C++ ToolKit: src/objects/general/Int_fuzz.cpp Source File

(lim && lim !=

) {

(f2.

()) {

().push_back(*it + n1 - n2);

kInfinity = 1.0e20;

hit_pct =

, hit_unk =

, hit_circle =

;

min_delta = 0.0, max_delta = 0.0;

(

= 0;

< 2; ++

) {

(

.Which()) {

min_delta -=

.GetP_m();

max_delta +=

.GetP_m();

min_delta -=

-

.GetRange().GetMin();

max_delta +=

.GetRange().GetMax() -

;

min_delta -= 0.001 *

*

.GetPct();

max_delta += 0.001 *

*

.GetPct();

(

.GetLim()) {

min_delta = -kInfinity;

max_delta = kInfinity;

min_delta = -kInfinity;

(

.GetAlt().empty()) {

min_delta = max_delta =

.GetAlt().front();

(*it < min_delta) {

}

(*it > max_delta) {

min_delta += *

.rbegin();

max_delta += *

.begin();

(

==

&& max_delta - min_delta < kInfinity / 2) {

(min_delta, max_delta);

(min_delta > max_delta) {

(min_delta, max_delta);

(min_delta < -kInfinity / 2) {

(max_delta > kInfinity / 2) {

}

(max_delta > kInfinity / 2) {

}

( !

.empty() ) {

(max_delta - min_delta < 0.5) {

alt.push_back(n1 + *it + min_delta_sp);

min_delta += *

.rbegin();

max_delta += *

.begin();

(min_delta > max_delta) {

(min_delta, max_delta);

.SetMin(n1 + min_delta_sp);

.SetMax(n1 + max_delta_sp);

.SetMin(n1 + min_delta_sp + *

.begin());

.SetMax(n1 + max_delta_sp + *

.rbegin());

}

(max_delta - min_delta < 0.5) {

= 0.5 * (min_delta + max_delta);

rdelta = floor(

+ 0.5);

(

- rdelta > 0.25) {

}

(

- rdelta < -0.25) {

}

(hit_circle) {

}

(hit_pct) {

n1 += (

)floor(0.5 * (min_delta + max_delta + 1));

((

)floor(500.0 * (max_delta - min_delta) / n1 + 0.5));

}

(min_delta + max_delta < 0.5) {

.SetMin(n1 + min_delta_sp);

.SetMax(n1 + max_delta_sp);

.SetMax(

+

-

.GetMin());

.SetMin(

+

- old_max);

void Add(const CInt_fuzz &f2, TSeqPos &n1, TSeqPos n2, ECombine mode=eAmplify)

void AssignTranslated(const CInt_fuzz &f2, TSeqPos n1, TSeqPos n2)

n1 and n2 are the targets of the fuzz

@ eReduce

go for the smallest range that allows each value individually to vary freely as long as the other bal...

void GetLabel(string *label, TSeqPos pos, bool right=true) const

unsigned int TSeqPos

Type for sequence locations and lengths.

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

int TSignedSeqPos

Type for signed sequence position.

#define NON_CONST_ITERATE(Type, Var, Cont)

Non constant version of ITERATE macro.

void swap(NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair1, NCBI_NS_NCBI::pair_base_member< T1, T2 > &pair2)

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

static const char label[]

void SetMin(TMin value)

Assign a value to Min data member.

TRange & SetRange(void)

Select the variant.

TAlt & SetAlt(void)

Select the variant.

TPct GetPct(void) const

Get the variant data.

TLim GetLim(void) const

Get the variant data.

TP_m & SetP_m(void)

Select the variant.

TMin GetMin(void) const

Get the Min member data.

void SetMax(TMax value)

Assign a value to Max data member.

E_Choice Which(void) const

Which variant is currently selected.

TLim & SetLim(void)

Select the variant.

const TAlt & GetAlt(void) const

Get the variant data.

TPct & SetPct(void)

Select the variant.

TMax GetMax(void) const

Get the Max member data.

TP_m GetP_m(void) const

Get the variant data.

const TRange & GetRange(void) const

Get the variant data.

@ eLim_other

something else

@ eLim_circle

artificial break at origin of circle

@ eLim_tl

space to left of position

@ eLim_tr

space to right of position

@ e_Pct

% plus or minus (x10) 0-1000

@ e_Alt

set of alternatives for the integer

@ e_P_m

plus or minus fixed amount

Int4 delta(size_t dimension_, const Int4 *score_)

double r(size_t dimension_, const Int4 *score_, const double *prob_, double theta_)

static PCRE2_SIZE * offsets

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