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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Gnomon__param___8cpp_source.html below:

NCBI C++ ToolKit: src/algo/gnomon/Gnomon_param_.cpp Source File

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

m_Coding_region.Destruct();

e_Non_coding_region:

m_object->RemoveReference();

(m_object =

(pool) ncbi::objects::CIntergenic_params())->

();

(m_object =

(pool) ncbi::objects::CIntron_params())->

();

(m_object =

(pool) ncbi::objects::CExon_params())->

();

(m_object =

(pool) ncbi::objects::CMarkov_chain_array())->

();

(m_object =

(pool) ncbi::objects::CMarkov_chain_array())->

();

(m_object =

(pool) ncbi::objects::CMarkov_chain_array())->

();

(m_object =

(pool) ncbi::objects::CMarkov_chain_array())->

();

e_Coding_region:

m_Coding_region.Construct();

e_Non_coding_region:

(m_object =

(pool) ncbi::objects::CMarkov_chain_params())->

();

NCBI_NS_NCBI::CInvalidChoiceSelection::GetName(index, sm_SelectionNames,

(sm_SelectionNames)/

(sm_SelectionNames[0]));

NCBI_NS_NCBI::CInvalidChoiceSelection(

,

, m_choice, index, sm_SelectionNames,

(sm_SelectionNames)/

(sm_SelectionNames[0]));

CheckSelected(e_Intergenic);

*

*

(m_object);

( m_choice != e_Intergenic || m_object != ptr ) {

m_choice = e_Intergenic;

CheckSelected(e_Intron);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Intron || m_object != ptr ) {

CheckSelected(e_Exon);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Exon || m_object != ptr ) {

CheckSelected(e_Start);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Start || m_object != ptr ) {

CheckSelected(e_Stop);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Stop || m_object != ptr ) {

CheckSelected(e_Donor);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Donor || m_object != ptr ) {

CheckSelected(e_Acceptor);

*

*

(m_object);

*

*

(m_object);

( m_choice != e_Acceptor || m_object != ptr ) {

m_choice = e_Acceptor;

CheckSelected(e_Non_coding_region);

( m_choice != e_Non_coding_region || m_object != ptr ) {

m_choice = e_Non_coding_region;

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

(*m_Gc_content_range).Reset();

->RandomOrder();

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

BEGIN_NAMED_CHOICE_INFO("", CGnomon_param_Base::C_Param)

BEGIN_NAMED_BASE_CLASS_INFO("Gnomon-param", CGnomon_param)

BEGIN_NAMED_CLASS_INFO("", CGnomon_param_Base::C_Gc_content_range)

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

CMarkov_chain_params –.

#define DIAG_COMPILE_INFO

Make compile time diagnostic information object to use in CNcbiDiag and CException.

#define MEMBER_PTR(MemberName)

#define ADD_NAMED_REF_MEMBER(MemberAlias, MemberName, ClassName)

#define ADD_NAMED_REF_CHOICE_VARIANT(MemberAlias, MemberName, ClassName)

#define ADD_NAMED_STD_MEMBER(MemberAlias, MemberName)

#define SET_CLASS_MODULE(ModuleName)

#define SET_INTERNAL_NAME(OwnerName, MemberName)

#define SET_CHOICE_MODULE(ModuleName)

#define ADD_NAMED_BUF_CHOICE_VARIANT(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

void AddReference(void) const

Add reference to object.

bool IsAllocatedInPool(void) const THROWS_NONE

Check if object is allocated in memory pool (not system heap)

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

TAcceptor & SetAcceptor(void)

Select the variant.

TDonor & SetDonor(void)

Select the variant.

TStart & SetStart(void)

Select the variant.

virtual void Reset(void)

Reset the whole object.

const TNon_coding_region & GetNon_coding_region(void) const

Get the variant data.

const TStop & GetStop(void) const

Get the variant data.

const TStart & GetStart(void) const

Get the variant data.

TParam & SetParam(void)

Assign a value to Param data member.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

CRef< TGc_content_range > m_Gc_content_range

const TIntron & GetIntron(void) const

Get the variant data.

C_Gc_content_range TGc_content_range

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

void Reset(void)

Reset the whole object.

TNon_coding_region & SetNon_coding_region(void)

Select the variant.

~C_Gc_content_range(void)

void Reset(void)

Reset the whole object.

TIntron & SetIntron(void)

Select the variant.

void ResetFrom(void)

Reset From data member.

E_Choice

Choice variants.

TExon & SetExon(void)

Select the variant.

TIntergenic & SetIntergenic(void)

Select the variant.

void ResetSelection(void)

Reset the selection (set it to e_not_set).

const TDonor & GetDonor(void) const

Get the variant data.

void ResetTo(void)

Reset To data member.

const TAcceptor & GetAcceptor(void) const

Get the variant data.

TGc_content_range & SetGc_content_range(void)

Assign a value to Gc_content_range data member.

virtual ~CGnomon_param_Base(void)

void ResetGc_content_range(void)

Reset Gc_content_range data member.

const TIntergenic & GetIntergenic(void) const

Get the variant data.

const TExon & GetExon(void) const

Get the variant data.

static const char *const sm_SelectionNames[]

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

TStop & SetStop(void)

Select the variant.

void ResetParam(void)

Reset Param data member.

const GenericPointer< typename T::ValueType > T2 value

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