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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Gb__qual_8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seqfeat/Gb_qual.hpp Source File

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39 #ifndef OBJECTS_SEQFEAT_GB_QUAL_HPP 40 #define OBJECTS_SEQFEAT_GB_QUAL_HPP 73  static void

ParseExperiment(

const string

&

orig

,

string

& category,

string

& experiment,

string

& doi);

74  static string

BuildExperiment(

const string

& category,

const string

& experiment,

const string

& doi);

76  static bool

CleanupRptUnitSeq(

string

&

val

);

77  static bool

CleanupReplace(

string

&

val

);

78  static bool

CleanupRptUnitRange(

string

&

val

);

83  static bool

IsValidRptTypeValue(

const string

&

val

);

84  static bool

FixRptTypeValue(

string

&

val

);

89  static bool

IsValidPseudogeneValue(

const string

&

val

);

90  static bool

FixPseudogeneValue(

string

&

val

);

95  static bool

FixRecombinationClassValue(

string

&

val

);

97  static bool

IsLegalMobileElementValue(

const string

&

val

);

98  static void

GetMobileElementValueElements(

const string

&

val

,

string

& element_type,

string

& element_name);

99  static bool

FixMobileElementValue(

string

&

val

);

101  static bool

IsIllegalQualName(

const string

&

val

);

104  static void

ParseInferenceString(

string val

,

string

&category,

string

&type_str,

bool

&is_same_species,

string

&

database

,

105  string

&accession,

string

&program,

string

&

version

,

string

&acc_list);

107  static string

CleanupAndRepairInference(

const string

&orig_inference );

109  static bool

IsLegalInferenceDatabase(

const string

& db);

117  static bool

x_CleanupRptAndReplaceSeq(

string

&

val

);

162  static void

GetPrefixAndRemainder (

const string

& inference,

string

& prefix,

string

& remainder);

@Gb_qual.hpp User-defined methods of the data storage class.

int Compare(const CGb_qual &gbqual) const

CStaticArraySet< const char *, PNocase_CStr > TLegalRecombinationClassSet

CGb_qual & operator=(const CGb_qual &value)

CStaticArraySet< const char *, PNocase_CStr > TLegalPseudogeneSet

CGb_qual(const CGb_qual &value)

CStaticArraySet< const char *, PNocase_CStr > TLegalRepeatTypeSet

Include a standard set of the NCBI C++ Toolkit most basic headers.

The NCBI C++ standard methods for dealing with std::string.

sequence::ECompare Compare(const CSeq_loc &loc1, const CSeq_loc &loc2, CScope *scope)

Returns the sequence::ECompare containment relationship between CSeq_locs.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQFEAT_EXPORT

TQual & SetQual(void)

Assign a value to Qual data member.

const TVal & GetVal(void) const

Get the Val member data.

TVal & SetVal(void)

Assign a value to Val data member.

const TQual & GetQual(void) const

Get the Qual member data.

where boath are integers</td > n< td ></td > n</tr > n< tr > n< td > tse</td > n< td > optional</td > n< td > String</td > n< td class=\"description\"> TSE option controls what blob is orig

use only n Cassandra database for the lookups</td > n</tr > n< tr > n< td > yes</td > n< td > do not use tables BIOSEQ_INFO and BLOB_PROP in the Cassandra database

const string version

version string

const GenericPointer< typename T::ValueType > T2 value

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