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NCBI C++ ToolKit: include/objects/genomecoll/GC_Sequence_.hpp Source File

ePatch_type_novel = 0,

ePatch_type_other = 255

list< CRef< CSeq_annot > >

;

IsSetSeq_id(

)

;

CanGetSeq_id(

)

;

ResetSeq_id(

);

& GetSeq_id(

)

;

IsSetSeq_id_synonyms(

)

;

CanGetSeq_id_synonyms(

)

;

ResetSeq_id_synonyms(

);

IsSetDescr(

)

;

CanGetDescr(

)

;

ResetDescr(

);

& GetDescr(

)

;

& SetDescr(

);

IsSetAnnot(

)

;

CanGetAnnot(

)

;

ResetAnnot(

);

& GetAnnot(

)

;

& SetAnnot(

);

IsSetSequences(

)

;

CanGetSequences(

)

;

ResetSequences(

);

& GetSequences(

)

;

IsSetStructure(

)

;

CanGetStructure(

)

;

ResetStructure(

);

& GetStructure(

)

;

IsSetStats(

)

;

CanGetStats(

)

;

ResetStats(

);

& GetStats(

)

;

& SetStats(

);

IsSetPatch_type(

)

;

CanGetPatch_type(

)

;

ResetPatch_type(

);

IsSetRoles(

)

;

CanGetRoles(

)

;

ResetRoles(

);

& GetRoles(

)

;

& SetRoles(

);

Reset(

);

User-defined methods of the data storage class.

GC-Sequence: Used for scaffolds, scaffold-sets and components in Gencoll terminology.

@Seq_descr.hpp User-defined methods of the data storage class.

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GENOME_COLLECTION_EXPORT

bool CanGetSequences(void) const

Check if it is safe to call GetSequences method.

bool CanGetSeq_id(void) const

Check if it is safe to call GetSeq_id method.

TPatch_type & SetPatch_type(void)

Assign a value to Patch_type data member.

const TStats & GetStats(void) const

Get the Stats member data.

const TDescr & GetDescr(void) const

Get the Descr member data.

Tparent::CMemberIndex< E_memberIndex, 10 > TmemberIndex

bool IsSetDescr(void) const

Various attributes assigned at this level: biosrc, comments, publications...

const TRoles & GetRoles(void) const

Get the Roles member data.

const TStructure & GetStructure(void) const

Get the Structure member data.

bool CanGetAnnot(void) const

Check if it is safe to call GetAnnot method.

list< CRef< CSeq_annot > > TAnnot

bool CanGetSeq_id_synonyms(void) const

Check if it is safe to call GetSeq_id_synonyms method.

bool CanGetStats(void) const

Check if it is safe to call GetStats method.

list< CRef< CSeq_annot > > m_Annot

TSeq_id_synonyms & SetSeq_id_synonyms(void)

Assign a value to Seq_id_synonyms data member.

list< CRef< CGC_TypedSeqId > > TSeq_id_synonyms

TSeq_id & SetSeq_id(void)

Assign a value to Seq_id data member.

TRoles & SetRoles(void)

Assign a value to Roles data member.

TAnnot & SetAnnot(void)

Assign a value to Annot data member.

bool IsSetPatch_type(void) const

Check if a value has been assigned to Patch_type data member.

CRef< TStructure > m_Structure

CGC_Sequence_Base & operator=(const CGC_Sequence_Base &)

TSequences & SetSequences(void)

Assign a value to Sequences data member.

bool IsSetAnnot(void) const

Feature annotation; Contains Pseudo Autosomal regions on chromosomes and scaffolds in the following f...

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetStructure(void) const

locations of ordered scaffolds/components Check if a value has been assigned to Structure data member...

const TSeq_id_synonyms & GetSeq_id_synonyms(void) const

Get the Seq_id_synonyms member data.

const TAnnot & GetAnnot(void) const

Get the Annot member data.

bool CanGetRoles(void) const

Check if it is safe to call GetRoles method.

list< CRef< CGC_TaggedSequences > > TSequences

bool IsSetSequences(void) const

placed: populated both on chromosome and scaffold levels unlocalized: populated on chromosome level C...

void ResetSeq_id(void)

Reset Seq_id data member.

list< CRef< CGC_TaggedSequences > > m_Sequences

bool CanGetPatch_type(void) const

Check if it is safe to call GetPatch_type method.

const TSequences & GetSequences(void) const

Get the Sequences member data.

void ResetPatch_type(void)

Reset Patch_type data member.

bool CanGetStructure(void) const

Check if it is safe to call GetStructure method.

bool IsSetStats(void) const

statistics Check if a value has been assigned to Stats data member.

bool IsSetRoles(void) const

sequence-role: what role(s) does this sequence have in the assembly Check if a value has been assigne...

bool IsSetSeq_id(void) const

identifiers are: Local / gpipe-satellite / genbank / refseq local is merely local name (or maybe with...

CGC_Sequence_Base(const CGC_Sequence_Base &)

bool IsSetSeq_id_synonyms(void) const

Other known identifiers: Local / gpipe-satellite / genbank / refseq Check if a value has been assigne...

TPatch_type GetPatch_type(void) const

Get the Patch_type member data.

list< CRef< CGC_TypedSeqId > > m_Seq_id_synonyms

bool CanGetDescr(void) const

Check if it is safe to call GetDescr method.

const TSeq_id & GetSeq_id(void) const

Get the Seq_id member data.

const GenericPointer< typename T::ValueType > T2 value

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