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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/GC__SeqIdAlias___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/genomecoll/GC_SeqIdAlias_.hpp Source File

41 #ifndef OBJECTS_GENOMECOLL_GC_SEQIDALIAS_BASE_HPP 42 #define OBJECTS_GENOMECOLL_GC_SEQIDALIAS_BASE_HPP 48 #ifndef BEGIN_objects_SCOPE 49 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 50 # define END_objects_SCOPE END_SCOPE(objects) 91

eSimilarity_unknown = 0,

92

eSimilarity_identical = 1,

93

eSimilarity_different = 255

126  bool

IsSetPublic(

void

)

const

;

133  bool

CanGetPublic(

void

)

const

;

136  void

ResetPublic(

void

);

142  const TPublic

& GetPublic(

void

)

const

;

164  bool

IsSetGpipe(

void

)

const

;

171  bool

CanGetGpipe(

void

)

const

;

174  void

ResetGpipe(

void

);

180  const TGpipe

& GetGpipe(

void

)

const

;

192  TGpipe

& SetGpipe(

void

);

206  bool

IsSetGi(

void

)

const

;

213  bool

CanGetGi(

void

)

const

;

216  void

ResetGi(

void

);

222  const TGi

& GetGi(

void

)

const

;

243  bool

IsSetSimilarity(

void

)

const

;

250  bool

CanGetSimilarity(

void

)

const

;

253  void

ResetSimilarity(

void

);

274  virtual void

Reset(

void

);

353  return m_Gi

.NotEmpty();

Seq-id-alias a sequence has multiple seq-ids - refseq, genbank, local and each one has both gi and ac...

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GENOME_COLLECTION_EXPORT

bool IsSetGpipe(void) const

the gpipe accession Check if a value has been assigned to Gpipe data member.

bool CanGetPublic(void) const

Check if it is safe to call GetPublic method.

const TGi & GetGi(void) const

Get the Gi member data.

bool IsSetPublic(void) const

the refseq/genbank accession Check if a value has been assigned to Public data member.

TPublic & SetPublic(void)

Assign a value to Public data member.

bool CanGetGi(void) const

Check if it is safe to call GetGi method.

void ResetSimilarity(void)

Reset Similarity data member.

CGC_SeqIdAlias_Base(const CGC_SeqIdAlias_Base &)

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetGi(void) const

optional since not all sequences have GIs Similarity: relationship between this synonym to main seqid...

bool IsSetSimilarity(void) const

Check if a value has been assigned to Similarity data member.

const TGpipe & GetGpipe(void) const

Get the Gpipe member data.

bool CanGetSimilarity(void) const

Check if it is safe to call GetSimilarity method.

TSimilarity & SetSimilarity(void)

Assign a value to Similarity data member.

const TPublic & GetPublic(void) const

Get the Public member data.

CGC_SeqIdAlias_Base & operator=(const CGC_SeqIdAlias_Base &)

void ResetPublic(void)

Reset Public data member.

Tparent::CMemberIndex< E_memberIndex, 5 > TmemberIndex

bool CanGetGpipe(void) const

Check if it is safe to call GetGpipe method.

TSimilarity GetSimilarity(void) const

Get the Similarity member data.

const GenericPointer< typename T::ValueType > T2 value


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