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NCBI C++ ToolKit: include/objects/genomecoll/GC_AssemblyUnit_.hpp Source File

eClass_haploid_unit = 1,

eClass_assembly_patch = 3,

list< CRef< CDbtag > >

;

list< CRef< CGC_Replicon > >

;

e_unplaced_unlocalized_stats

IsSetId(

)

;

CanGetId(

)

;

ResetId(

);

IsSetClass(

)

;

CanGetClass(

)

;

ResetClass(

);

GetClass(

)

;

& SetClass(

);

IsSetDesc(

)

;

CanGetDesc(

)

;

ResetDesc(

);

& GetDesc(

)

;

& SetDesc(

);

IsSetMols(

)

;

CanGetMols(

)

;

ResetMols(

);

& GetMols(

)

;

& SetMols(

);

IsSetOther_sequences(

)

;

CanGetOther_sequences(

)

;

ResetOther_sequences(

);

IsSetStats(

)

;

CanGetStats(

)

;

ResetStats(

);

& GetStats(

)

;

& SetStats(

);

IsSetUnplaced_stats(

)

;

CanGetUnplaced_stats(

)

;

ResetUnplaced_stats(

);

IsSetUnplaced_unlocalized_stats(

)

;

CanGetUnplaced_unlocalized_stats(

)

;

ResetUnplaced_unlocalized_stats(

);

Reset(

);

.NotEmpty();

CGC_AssemblyUnit_Base –.

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GENOME_COLLECTION_EXPORT

bool CanGetDesc(void) const

Check if it is safe to call GetDesc method.

bool IsSetId(void) const

The identifier of this assembly Contains: GenColl internal id, GenColl accession.version,...

bool CanGetId(void) const

Check if it is safe to call GetId method.

TMols & SetMols(void)

Assign a value to Mols data member.

const TUnplaced_stats & GetUnplaced_stats(void) const

Get the Unplaced_stats member data.

const TUnplaced_unlocalized_stats & GetUnplaced_unlocalized_stats(void) const

Get the Unplaced_unlocalized_stats member data.

const TDesc & GetDesc(void) const

Get the Desc member data.

CGC_AssemblyUnit_Base(const CGC_AssemblyUnit_Base &)

void ResetClass(void)

Reset Class data member.

TClass GetClass(void) const

Get the Class member data.

bool CanGetClass(void) const

Check if it is safe to call GetClass method.

list< CRef< CDbtag > > TId

bool IsSetMols(void) const

collections of molecules for this assembly Check if a value has been assigned to Mols data member.

CGC_AssemblyUnit_Base & operator=(const CGC_AssemblyUnit_Base &)

list< CRef< CGC_Scaf_stats > > TUnplaced_stats

list< CRef< CGC_Replicon > > m_Mols

bool IsSetUnplaced_stats(void) const

Check if a value has been assigned to Unplaced_stats data member.

list< CRef< CGC_Scaf_stats > > m_Unplaced_unlocalized_stats

bool IsSetOther_sequences(void) const

On primary assembly-unit: here will be the unplaced sequences On alt-loci: list of sequences aligned/...

const TOther_sequences & GetOther_sequences(void) const

Get the Other_sequences member data.

void ResetDesc(void)

Reset Desc data member.

list< CRef< CDbtag > > m_Id

TDesc & SetDesc(void)

Assign a value to Desc data member.

TId & SetId(void)

Assign a value to Id data member.

bool IsSetDesc(void) const

descriptors live in a shared data block Check if a value has been assigned to Desc data member.

DECLARE_INTERNAL_TYPE_INFO()

const TMols & GetMols(void) const

Get the Mols member data.

list< CRef< CGC_Replicon > > TMols

bool CanGetMols(void) const

Check if it is safe to call GetMols method.

TUnplaced_unlocalized_stats & SetUnplaced_unlocalized_stats(void)

Assign a value to Unplaced_unlocalized_stats data member.

bool IsSetUnplaced_unlocalized_stats(void) const

Check if a value has been assigned to Unplaced_unlocalized_stats data member.

const TStats & GetStats(void) const

Get the Stats member data.

TUnplaced_stats & SetUnplaced_stats(void)

Assign a value to Unplaced_stats data member.

bool CanGetOther_sequences(void) const

Check if it is safe to call GetOther_sequences method.

list< CRef< CGC_Scaf_stats > > m_Unplaced_stats

EClass

'class' defines the semantics of how to interpret this item

TClass & SetClass(void)

Assign a value to Class data member.

bool IsSetClass(void) const

Check if a value has been assigned to Class data member.

bool CanGetUnplaced_unlocalized_stats(void) const

Check if it is safe to call GetUnplaced_unlocalized_stats method.

TOther_sequences & SetOther_sequences(void)

Assign a value to Other_sequences data member.

Tparent::CMemberIndex< E_memberIndex, 9 > TmemberIndex

bool CanGetStats(void) const

Check if it is safe to call GetStats method.

list< CRef< CGC_Scaf_stats > > TUnplaced_unlocalized_stats

bool CanGetUnplaced_stats(void) const

Check if it is safe to call GetUnplaced_stats method.

list< CRef< CGC_TaggedSequences > > m_Other_sequences

list< CRef< CGC_TaggedSequences > > TOther_sequences

bool IsSetStats(void) const

statistics "stats" field holds stats for all chromosomes combined: ordered/unordered scaffolds "unpla...

const TId & GetId(void) const

Get the Id member data.

const GenericPointer< typename T::ValueType > T2 value

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