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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/GC__AssemblySet___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/genomecoll/GC_AssemblySet_.hpp Source File

eSet_type_full_assembly = 0,

eSet_type_assembly_set = 100,

eClass_full_assembly = 0,

eClass_haploid_with_alt_loci = 2,

eClass_unresolved_diploid = 4,

eClass_alternate_haplotype = 5,

eClass_alternate_pseudohaplotype = 6,

eClass_annotation_target_set = 101,

eClass_analysis_set = 102,

list< CRef< CDbtag > >

;

IsSetId(

)

;

CanGetId(

)

;

ResetId(

);

IsSetSet_type(

)

;

CanGetSet_type(

)

;

ResetSet_type(

);

IsSetClass(

)

;

CanGetClass(

)

;

ResetClass(

);

GetClass(

)

;

& SetClass(

);

IsSetDesc(

)

;

CanGetDesc(

)

;

ResetDesc(

);

& GetDesc(

)

;

& SetDesc(

);

IsSetPrimary_assembly(

)

;

CanGetPrimary_assembly(

)

;

ResetPrimary_assembly(

);

IsSetMore_assemblies(

)

;

CanGetMore_assemblies(

)

;

ResetMore_assemblies(

);

IsSetStats(

)

;

CanGetStats(

)

;

ResetStats(

);

& GetStats(

)

;

& SetStats(

);

Reset(

);

.NotEmpty();

CGC_AssemblySet_Base –.

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_GENOME_COLLECTION_EXPORT

DECLARE_INTERNAL_TYPE_INFO()

list< CRef< CGC_Assembly > > m_More_assemblies

void ResetDesc(void)

Reset Desc data member.

const TId & GetId(void) const

Get the Id member data.

bool CanGetPrimary_assembly(void) const

Check if it is safe to call GetPrimary_assembly method.

TPrimary_assembly & SetPrimary_assembly(void)

Assign a value to Primary_assembly data member.

bool IsSetSet_type(void) const

Check if a value has been assigned to Set_type data member.

bool IsSetClass(void) const

Check if a value has been assigned to Class data member.

TClass GetClass(void) const

Get the Class member data.

TSet_type & SetSet_type(void)

Assign a value to Set_type data member.

CGC_AssemblySet_Base(const CGC_AssemblySet_Base &)

bool IsSetId(void) const

The identifier of this assembly examples: GC internal id, Assembly-accession.version Types of DbTags ...

CRef< TPrimary_assembly > m_Primary_assembly

bool CanGetId(void) const

Check if it is safe to call GetId method.

bool IsSetDesc(void) const

descriptors live in a shared data block Check if a value has been assigned to Desc data member.

TId & SetId(void)

Assign a value to Id data member.

bool IsSetPrimary_assembly(void) const

we contain hierarchically a set of assemblies Check if a value has been assigned to Primary_assembly ...

Tparent::CMemberIndex< E_memberIndex, 8 > TmemberIndex

CGC_AssemblySet_Base & operator=(const CGC_AssemblySet_Base &)

bool IsSetStats(void) const

statistics "stats" field holds stats for all chromosomes combined: Check if a value has been assigned...

bool IsSetMore_assemblies(void) const

Check if a value has been assigned to More_assemblies data member.

bool CanGetSet_type(void) const

Check if it is safe to call GetSet_type method.

void ResetClass(void)

Reset Class data member.

const TDesc & GetDesc(void) const

Get the Desc member data.

bool CanGetStats(void) const

Check if it is safe to call GetStats method.

const TPrimary_assembly & GetPrimary_assembly(void) const

Get the Primary_assembly member data.

TClass & SetClass(void)

Assign a value to Class data member.

void ResetPrimary_assembly(void)

Reset Primary_assembly data member.

CGC_Assembly TPrimary_assembly

TDesc & SetDesc(void)

Assign a value to Desc data member.

TSet_type GetSet_type(void) const

Get the Set_type member data.

list< CRef< CDbtag > > TId

ESet_type

set type: Assembly-Sets can be of 2 categories

EClass

'class' defines the semantics of how to interpret this item

bool CanGetClass(void) const

Check if it is safe to call GetClass method.

list< CRef< CGC_Assembly > > TMore_assemblies

const TStats & GetStats(void) const

Get the Stats member data.

TMore_assemblies & SetMore_assemblies(void)

Assign a value to More_assemblies data member.

void ResetSet_type(void)

Reset Set_type data member.

bool CanGetMore_assemblies(void) const

Check if it is safe to call GetMore_assemblies method.

const TMore_assemblies & GetMore_assemblies(void) const

Get the More_assemblies member data.

bool CanGetDesc(void) const

Check if it is safe to call GetDesc method.

list< CRef< CDbtag > > m_Id

const GenericPointer< typename T::ValueType > T2 value

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