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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/FxnSet___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/docsum/FxnSet_.hpp Source File

eAttlist_fxnClass_locus_region = 1,

eAttlist_fxnClass_coding_unknown = 2,

eAttlist_fxnClass_synonymous_codon = 3,

eAttlist_fxnClass_non_synonymous_codon = 4,

eAttlist_fxnClass_mrna_utr = 5,

eAttlist_fxnClass_intron_variant = 6,

eAttlist_fxnClass_splice_region_variant = 7,

eAttlist_fxnClass_reference = 8,

eAttlist_fxnClass_coding_exception = 9,

eAttlist_fxnClass_coding_sequence_variant = 10,

eAttlist_fxnClass_nc_transcript_variant = 11,

eAttlist_fxnClass_downstream_variant_500B = 12,

eAttlist_fxnClass_upstream_variant_2KB = 13,

eAttlist_fxnClass_nonsense = 14,

eAttlist_fxnClass_missense = 15,

eAttlist_fxnClass_frameshift_variant = 16,

eAttlist_fxnClass_utr_variant_3_prime = 17,

eAttlist_fxnClass_utr_variant_5_prime = 18,

eAttlist_fxnClass_splice_acceptor_variant = 19,

eAttlist_fxnClass_splice_donor_variant = 20,

eAttlist_fxnClass_cds_indel = 21,

eAttlist_fxnClass_stop_gained = 22,

eAttlist_fxnClass_stop_lost = 23,

eAttlist_fxnClass_complex_change_in_transcript = 24,

eAttlist_fxnClass_incomplete_terminal_codon_variant = 25,

eAttlist_fxnClass_nmd_transcript_variant = 26,

eAttlist_fxnClass_mature_miRNA_variant = 27,

eAttlist_fxnClass_upstream_variant_5KB = 28,

eAttlist_fxnClass_downstream_variant_5KB = 29,

eAttlist_fxnClass_intergenic = 30

IsSetGeneId(

)

;

CanGetGeneId(

)

;

ResetGeneId(

);

GetGeneId(

)

;

IsSetSymbol(

)

;

CanGetSymbol(

)

;

ResetSymbol(

);

& GetSymbol(

)

;

IsSetMrnaAcc(

)

;

CanGetMrnaAcc(

)

;

ResetMrnaAcc(

);

& GetMrnaAcc(

)

;

IsSetMrnaVer(

)

;

CanGetMrnaVer(

)

;

ResetMrnaVer(

);

IsSetProtAcc(

)

;

CanGetProtAcc(

)

;

ResetProtAcc(

);

& GetProtAcc(

)

;

IsSetProtVer(

)

;

CanGetProtVer(

)

;

ResetProtVer(

);

IsSetFxnClass(

)

;

CanGetFxnClass(

)

;

ResetFxnClass(

);

IsSetReadingFrame(

)

;

CanGetReadingFrame(

)

;

ResetReadingFrame(

);

IsSetAllele(

)

;

CanGetAllele(

)

;

ResetAllele(

);

& GetAllele(

)

;

IsSetResidue(

)

;

CanGetResidue(

)

;

ResetResidue(

);

IsSetAaPosition(

)

;

CanGetAaPosition(

)

;

ResetAaPosition(

);

IsSetMrnaPosition(

)

;

CanGetMrnaPosition(

)

;

ResetMrnaPosition(

);

IsSetSoTerm(

)

;

CanGetSoTerm(

)

;

ResetSoTerm(

);

& GetSoTerm(

)

;

IsSetAttlist(

)

;

CanGetAttlist(

)

;

ResetAttlist(

);

& GetAttlist(

)

;

IsSetFxnSet(

)

;

CanGetFxnSet(

)

;

ResetFxnSet(

);

SetFxnSet(

);

Reset(

);

IsSetGeneId();

(!CanGetGeneId()) {

(!IsSetGeneId()) {

IsSetSymbol();

(!CanGetSymbol()) {

m_Symbol = std::forward<CFxnSet_Base::C_Attlist::TSymbol>(

);

(!IsSetSymbol()) {

IsSetMrnaAcc();

(!CanGetMrnaAcc()) {

m_MrnaAcc = std::forward<CFxnSet_Base::C_Attlist::TMrnaAcc>(

);

(!IsSetMrnaAcc()) {

IsSetMrnaVer();

(!CanGetMrnaVer()) {

(!IsSetMrnaVer()) {

IsSetProtAcc();

(!CanGetProtAcc()) {

m_ProtAcc = std::forward<CFxnSet_Base::C_Attlist::TProtAcc>(

);

(!IsSetProtAcc()) {

IsSetProtVer();

(!CanGetProtVer()) {

(!IsSetProtVer()) {

IsSetFxnClass();

(!CanGetFxnClass()) {

m_FxnClass =

;

(!IsSetFxnClass()) {

IsSetReadingFrame();

(!CanGetReadingFrame()) {

m_ReadingFrame;

m_ReadingFrame =

;

(!IsSetReadingFrame()) {

memset(&m_ReadingFrame,

(),

(m_ReadingFrame));

m_ReadingFrame;

IsSetAllele();

(!CanGetAllele()) {

m_Allele = std::forward<CFxnSet_Base::C_Attlist::TAllele>(

);

(!IsSetAllele()) {

IsSetResidue();

(!CanGetResidue()) {

m_Residue = std::forward<CFxnSet_Base::C_Attlist::TResidue>(

);

(!IsSetResidue()) {

IsSetAaPosition();

(!CanGetAaPosition()) {

m_AaPosition;

m_AaPosition =

;

(!IsSetAaPosition()) {

m_AaPosition;

IsSetMrnaPosition();

(!CanGetMrnaPosition()) {

m_MrnaPosition;

m_MrnaPosition =

;

(!IsSetMrnaPosition()) {

memset(&m_MrnaPosition,

(),

(m_MrnaPosition));

m_MrnaPosition;

IsSetSoTerm();

(!CanGetSoTerm()) {

m_SoTerm = std::forward<CFxnSet_Base::C_Attlist::TSoTerm>(

);

(!IsSetSoTerm()) {

functional relationship of SNP (and possibly alleles) to genes at contig location as defined in organ...

Base class for all serializable objects.

static char UnassignedByte(void)

void ThrowUnassigned(TMemberIndex index) const

#define ENUM_METHOD_NAME(EnumName)

static string UnassignedString(void)

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_DOCSUM_EXPORT

bool CanGetReadingFrame(void) const

Check if it is safe to call GetReadingFrame method.

bool IsSetProtVer(void) const

protein version if variation is in protein Check if a value has been assigned to ProtVer data member.

bool CanGetMrnaAcc(void) const

Check if it is safe to call GetMrnaAcc method.

bool CanGetAttlist(void) const

Check if it is safe to call GetAttlist method.

bool CanGetProtAcc(void) const

Check if it is safe to call GetProtAcc method.

CFxnSet_Base(const CFxnSet_Base &)

bool IsSetReadingFrame(void) const

Check if a value has been assigned to ReadingFrame data member.

bool IsSetGeneId(void) const

gene-id of gene as aligned to contig Check if a value has been assigned to GeneId data member.

DECLARE_INTERNAL_TYPE_INFO()

void ResetProtVer(void)

Reset ProtVer data member.

bool IsSetAllele(void) const

variation allele: * suffix indicates allele of contig at this location Check if a value has been assi...

EAttlist_fxnClass TFxnClass

bool CanGetMrnaPosition(void) const

Check if it is safe to call GetMrnaPosition method.

C_Attlist(const C_Attlist &)

TProtVer & SetProtVer(void)

Assign a value to ProtVer data member.

TMrnaVer GetMrnaVer(void) const

Get the MrnaVer member data.

bool IsSetProtAcc(void) const

protein accession if variation in protein Check if a value has been assigned to ProtAcc data member.

bool CanGetAaPosition(void) const

Check if it is safe to call GetAaPosition method.

TGeneId GetGeneId(void) const

Get the GeneId member data.

bool CanGetFxnSet(void) const

Check if value of FxnSet member is getatable.

bool IsSetFxnSet(void) const

functional relationship of SNP (and possibly alleles) to genes at contig location as defined in organ...

bool IsSetAaPosition(void) const

position of the variant residue in peptide sequence Check if a value has been assigned to AaPosition ...

bool IsSetAttlist(void) const

Check if a value has been assigned to Attlist data member.

bool IsSetMrnaAcc(void) const

mRNA accession if variation in transcript Check if a value has been assigned to MrnaAcc data member.

CFxnSet_Base & operator=(const CFxnSet_Base &)

bool CanGetGeneId(void) const

Check if it is safe to call GetGeneId method.

void ResetReadingFrame(void)

Reset ReadingFrame data member.

void ResetMrnaVer(void)

Reset MrnaVer data member.

void SetFxnSet(void)

Set NULL data member (assign 'NULL' value to FxnSet data member).

TFxnClass GetFxnClass(void) const

Get the FxnClass member data.

void ResetAttlist(void)

Reset Attlist data member.

TResidue & SetResidue(void)

Assign a value to Residue data member.

bool CanGetSoTerm(void) const

Check if it is safe to call GetSoTerm method.

TAaPosition GetAaPosition(void) const

Get the AaPosition member data.

C_Attlist & operator=(const C_Attlist &)

TGeneId & SetGeneId(void)

Assign a value to GeneId data member.

const TMrnaAcc & GetMrnaAcc(void) const

Get the MrnaAcc member data.

void ResetAaPosition(void)

Reset AaPosition data member.

bool IsSetResidue(void) const

translated amino acid residue for allele Check if a value has been assigned to Residue data member.

const TSoTerm & GetSoTerm(void) const

Get the SoTerm member data.

TProtVer GetProtVer(void) const

Get the ProtVer member data.

const TSymbol & GetSymbol(void) const

Get the Symbol member data.

bool IsSetFxnClass(void) const

Check if a value has been assigned to FxnClass data member.

Tparent::CMemberIndex< E_memberIndex, 14 > TmemberIndex

const TAllele & GetAllele(void) const

Get the Allele member data.

bool IsSetSoTerm(void) const

Check if a value has been assigned to SoTerm data member.

CRef< TAttlist > m_Attlist

TFxnClass & SetFxnClass(void)

Assign a value to FxnClass data member.

bool CanGetResidue(void) const

Check if it is safe to call GetResidue method.

Tparent::CMemberIndex< E_memberIndex, 3 > TmemberIndex

TAaPosition & SetAaPosition(void)

Assign a value to AaPosition data member.

bool CanGetFxnClass(void) const

Check if it is safe to call GetFxnClass method.

void ResetGeneId(void)

Reset GeneId data member.

void ResetFxnClass(void)

Reset FxnClass data member.

EAttlist_fxnClass m_FxnClass

bool IsSetSymbol(void) const

symbol (official if present in Entrez Gene) of gene Check if a value has been assigned to Symbol data...

TReadingFrame GetReadingFrame(void) const

Get the ReadingFrame member data.

TMrnaAcc & SetMrnaAcc(void)

Assign a value to MrnaAcc data member.

bool IsSetMrnaPosition(void) const

Check if a value has been assigned to MrnaPosition data member.

TSymbol & SetSymbol(void)

Assign a value to Symbol data member.

TReadingFrame & SetReadingFrame(void)

Assign a value to ReadingFrame data member.

DECLARE_INTERNAL_TYPE_INFO()

bool IsSetMrnaVer(void) const

mRNA sequence version if variation is in transcripot Check if a value has been assigned to MrnaVer da...

const TAttlist & GetAttlist(void) const

Get the Attlist member data.

bool CanGetMrnaVer(void) const

Check if it is safe to call GetMrnaVer method.

TMrnaPosition & SetMrnaPosition(void)

Assign a value to MrnaPosition data member.

TAllele & SetAllele(void)

Assign a value to Allele data member.

const TProtAcc & GetProtAcc(void) const

Get the ProtAcc member data.

bool CanGetAllele(void) const

Check if it is safe to call GetAllele method.

EAttlist_fxnClass

variation in region of gene, but not in transcript - deprecated

TAttlist & SetAttlist(void)

Assign a value to Attlist data member.

void ResetMrnaPosition(void)

Reset MrnaPosition data member.

TSoTerm & SetSoTerm(void)

Assign a value to SoTerm data member.

bool CanGetSymbol(void) const

Check if it is safe to call GetSymbol method.

TMrnaVer & SetMrnaVer(void)

Assign a value to MrnaVer data member.

TProtAcc & SetProtAcc(void)

Assign a value to ProtAcc data member.

bool CanGetProtVer(void) const

Check if it is safe to call GetProtVer method.

const TResidue & GetResidue(void) const

Get the Residue member data.

void ResetFxnSet(void)

Reset FxnSet data member.

TMrnaPosition GetMrnaPosition(void) const

Get the MrnaPosition member data.

static const char * GetResidue(TokenStatBlkPtr stoken)

const GenericPointer< typename T::ValueType > T2 value

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