RetroSearch Browse

Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Dense__seg_8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seqalign/Dense_seg.hpp Source File

Go to the documentation of this file.

Go to the SVN repository for this file.

37 #ifndef OBJECTS_SEQALIGN_DENSE_SEG_HPP 38 #define OBJECTS_SEQALIGN_DENSE_SEG_HPP 77 bool

IsSetWidths(

void

)

const

;

78 bool

CanGetWidths(

void

)

const

;

79 void

ResetWidths(

void

);

80 const TWidths

& GetWidths(

void

)

const

;

84 TDim

CheckNumRows(

void

)

const

;

85 TNumseg

CheckNumSegs(

void

)

const

;

86 void

Validate (

bool

full_test =

false

)

const

;

103 void

SwapRows(

TDim

row1,

TDim

row2);

128 void

OrderAdjacentGaps();

133 void

RemovePureGapSegs();

144 bool

ignore_strand =

false

);

151 const string

& transcript );

154 static void

SetGlobalReserveHooks(

void

);

255 static void

SetGlobalHook(

void

);

269 static void

SetGlobalHook(

void

);

283 static void

SetGlobalHook(

void

);

NCBISER_HAVE_GLOBAL_READ_MEMBER_HOOK(CDense_seg, "starts,lens,strands", new CDense_seg::CReserveHook) inline CDense_seg

ENa_strand Reverse(ENa_strand s)

Dense-seg: the densist packing for sequence alignments only.

CDense_seg & operator=(const CDense_seg &value)

TSeqPos GetSeqStop(TDim row) const

TWidths & SetWidths(void)

TSeqPos GetSeqStart(TDim row) const

bool IsSetWidths(void) const

CDense_seg(const CDense_seg &value)

bool CanGetWidths(void) const

CRange< TSeqPos > GetSeqRange(TDim row) const

const TWidths & GetWidths(void) const

Read hook for data member of a containing object (eg, SEQUENCE)

Base class for all serializable objects.

unsigned int TSeqPos

Type for sequence locations and lengths.

int TSignedSeqPos

Type for signed sequence position.

ESerialRecursionMode

How to assign and compare child sub-objects of serial objects.

virtual void Assign(const CSerialObject &source, ESerialRecursionMode how=eRecursive)

Set object to copy of another one.

@ eRecursive

Recursively.

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQALIGN_EXPORT

ENa_strand

strand of nucleic acid

const GenericPointer< typename T::ValueType > T2 value

std::istream & in(std::istream &in_, double &x_)

#define row(bind, expected)

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4