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NCBI C++ ToolKit: include/objects/seqalign/Dense_diag.hpp Source File

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39 #ifndef OBJECTS_SEQALIGN_DENSE_DIAG_HPP 40 #define OBJECTS_SEQALIGN_DENSE_DIAG_HPP 68  TDim

CheckNumRows(

void

)

const

;

69  void

Validate ()

const

;

101  if

(row < 0 || row >=

GetDim

()) {

103  "CDense_diag::GetSeqStart():" 104  " Invalid row number"

);

130  "CDense_diag::CheckNumRows()" 131  " dim is not consistent with ids.size & starts.size"

);

TSeqPos GetSeqStart(TDim row) const

TSeqPos GetSeqStop(TDim row) const

TDim CheckNumRows(void) const

Validators.

CRange< TSeqPos > GetSeqRange(TDim row) const

GetSeqRange.

CDense_diag(const CDense_diag &value)

CDense_diag & operator=(const CDense_diag &value)

unsigned int TSeqPos

Type for sequence locations and lengths.

int TSignedSeqPos

Type for signed sequence position.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

#define NCBI_SEQALIGN_EXPORT

TLen GetLen(void) const

Get the Len member data.

TDim GetDim(void) const

Get the Dim member data.

const TIds & GetIds(void) const

Get the Ids member data.

const TStarts & GetStarts(void) const

Get the Starts member data.

ENa_strand

strand of nucleic acid

const struct ncbi::grid::netcache::search::fields::SIZE size

const GenericPointer< typename T::ValueType > T2 value

#define row(bind, expected)


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