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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Dense__diag_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seqalign/Dense_diag.cpp Source File

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64 if

( !strands.empty() &&

65

strands.size() != numrows) {

67 "strands.size inconsistent with dim"

);

86 "Negative offset greater than seq position"

);

95 if

(row < 0 || row >=

GetDim

()) {

97 "CDense_diag::GetSeqStrand():" 98 " Invalid row number"

);

103 "CDense_diag::GetSeqStrand():" 104 " Strand doesn't exist for this row."

);

115 "Invalid row number in CreateRowSeq_interval(): "

User-defined methods of the data storage class.

void OffsetRow(TDim row, TSignedSeqPos offset)

Offset row's coords.

ENa_strand GetSeqStrand(TDim row) const

TDim CheckNumRows(void) const

Validators.

CRef< CSeq_interval > CreateRowSeq_interval(TDim row) const

int TSignedSeqPos

Type for signed sequence position.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string IntToString(int value, TNumToStringFlags flags=0, int base=10)

Convert int to string.

TLen GetLen(void) const

Get the Len member data.

TDim GetDim(void) const

Get the Dim member data.

const TIds & GetIds(void) const

Get the Ids member data.

TStarts & SetStarts(void)

Assign a value to Starts data member.

bool IsSetStrands(void) const

Check if a value has been assigned to Strands data member.

vector< ENa_strand > TStrands

const TStrands & GetStrands(void) const

Get the Strands member data.

const TStarts & GetStarts(void) const

Get the Starts member data.

bool CanGetStrands(void) const

Check if it is safe to call GetStrands method.

void SetTo(TTo value)

Assign a value to To data member.

ENa_strand

strand of nucleic acid

void SetId(TId &value)

Assign a value to Id data member.

void SetFrom(TFrom value)

Assign a value to From data member.

void SetStrand(TStrand value)

Assign a value to Strand data member.

const struct ncbi::grid::netcache::search::fields::SIZE size

#define row(bind, expected)

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