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NCBI C++ ToolKit: src/objects/blast/Blast4_value_.cpp Source File

->CodeVersion(22400);

->DataSpec(ncbi::EDataSpec::eASN);

User-defined methods of the data storage class.

User-defined methods of the data storage class.

User-defined methods of the data storage class.

BEGIN_NAMED_BASE_CHOICE_INFO("Blast4-value", CBlast4_value)

User-defined methods of the data storage class.

#define DIAG_COMPILE_INFO

Make compile time diagnostic information object to use in CNcbiDiag and CException.

#define ADD_NAMED_CHOICE_VARIANT(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

#define ADD_NAMED_REF_CHOICE_VARIANT(MemberAlias, MemberName, ClassName)

#define ADD_NAMED_ENUM_CHOICE_VARIANT(MemberAlias, MemberName, EnumName)

#define ADD_NAMED_STD_CHOICE_VARIANT(MemberAlias, MemberName)

#define SET_CHOICE_MODULE(ModuleName)

#define ADD_NAMED_BUF_CHOICE_VARIANT(MemberAlias, MemberName, TypeMacro, TypeMacroArgs)

void AddReference(void) const

Add reference to object.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

const TBioseq & GetBioseq(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TInteger_list > m_Integer_list

TSeq_align & SetSeq_align(void)

Select the variant.

const TSeq_id & GetSeq_id(void) const

Get the variant data.

const TCutoff & GetCutoff(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TBoolean_list > m_Boolean_list

const TBioseq_set & GetBioseq_set(void) const

Get the variant data.

TQuery_mask & SetQuery_mask(void)

Select the variant.

void ThrowInvalidSelection(E_Choice index) const

Throw 'InvalidSelection' exception.

virtual void ResetSelection(void)

Reset the selection (set it to e_not_set).

TBioseq & SetBioseq(void)

Select the variant.

const TSeq_align & GetSeq_align(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TBioseq_list > m_Bioseq_list

NCBI_NS_NCBI::CUnionBuffer< TStrand_type_list > m_Strand_type_list

static const char *const sm_SelectionNames[]

NCBI_NS_NCBI::CUnionBuffer< TString_list > m_String_list

NCBI_NS_NCBI::CUnionBuffer< TSeq_id_list > m_Seq_id_list

TSeq_id & SetSeq_id(void)

Select the variant.

TMatrix & SetMatrix(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TBig_integer_list > m_Big_integer_list

const TSeq_align_set & GetSeq_align_set(void) const

Get the variant data.

TBioseq_set & SetBioseq_set(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TReal_list > m_Real_list

virtual void Reset(void)

Reset the whole object.

TSeq_align_set & SetSeq_align_set(void)

Select the variant.

const TMatrix & GetMatrix(void) const

Get the variant data.

NCBI_NS_NCBI::CUnionBuffer< TMatrix_list > m_Matrix_list

TBig_integer m_Big_integer

TSeq_loc & SetSeq_loc(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< NCBI_NS_STD::string > m_string

TStrand_type m_Strand_type

TCutoff & SetCutoff(void)

Select the variant.

void Select(E_Choice index, EResetVariant reset=eDoResetVariant)

Select the requested variant if needed.

virtual ~CBlast4_value_Base(void)

const TQuery_mask & GetQuery_mask(void) const

Get the variant data.

static string SelectionName(E_Choice index)

Retrieve selection name (for diagnostic purposes).

E_Choice

Choice variants.

NCBI_NS_NCBI::CUnionBuffer< TSeq_align_list > m_Seq_align_list

TString & SetString(void)

Select the variant.

NCBI_NS_NCBI::CUnionBuffer< TCutoff_list > m_Cutoff_list

const TSeq_loc & GetSeq_loc(void) const

Get the variant data.

EBlast4_strand_type

Access to EBlast4_strand_type's attributes (values, names) as defined in spec.

void DoSelect(E_Choice index, CObjectMemoryPool *pool=0)

NCBI_NS_NCBI::CSerialObject * m_object

void CheckSelected(E_Choice index) const

Verify selection, throw exception if it differs from the expected.

NCBI_NS_NCBI::CUnionBuffer< TSeq_loc_list > m_Seq_loc_list

@ e_Query_mask

Intended to represent user-provided masking locations for a single query sequence (name field in Blas...

@ e_not_set

No variant selected.

@ e_Big_integer

scalar types

@ e_Big_integer_list

lists of scalar types

@ e_Bioseq_set

imported collection types

const GenericPointer< typename T::ValueType > T2 value

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