Home - News ( United States | United Kingdom | Italy | Germany ) - Football scores

Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Bioseq__set_8cpp_source.html below:

NCBI C++ ToolKit: src/objects/seqset/Bioseq_set.cpp Source File

(

.Which()) {

(!

.GetTextseq_Id()) {

}

(

.GetTextseq_Id()->IsSetAccession()) {

CBioseq_set::GetTypeInfo_enum_EClass();

best_is_na =

;

* best_seq_id = 0;

* best_seq_id_with_gb = 0;

* best_seq_id_with_accession = 0;

takeit =

, is_na;

* current_seq_id = 0;

* current_seq_id_with_gb = 0;

* current_seq_id_with_accession = 0;

(!current_seq_id) {

current_seq_id = &(*ii);

current_seq_id_with_gb = &(*ii);

current_seq_id_with_accession = &(*ii);

longer =

;

(best_seq_id_with_accession) {

(current_seq_id_with_accession) {

}

(current_seq_id_with_accession) {

}

(best_seq_id_with_gb) {

(current_seq_id_with_gb) {

}

(current_seq_id_with_gb) {

}

(best_is_na) {

best_seq_id = current_seq_id;

best_seq_id_with_gb = current_seq_id_with_gb;

best_seq_id_with_accession = current_seq_id_with_accession;

(best_seq_id_with_accession) {

best_seq_id = best_seq_id_with_accession;

(best_seq_id_with_gb) {

best_seq_id = best_seq_id_with_gb;

*

+=

;

= sset.size();

}

(

== 1) {

*

+=

;

+

}

(se.

() &&

);

+

((*it)->IsSeq()) {

& seq = (*it)->GetSeq();

);

+

((*it)->IsSeq()) {

(*it)->GetSeq();

);

( se->

() ) {

( se->

() ) {

static bool s_has_gb(const CSeq_id &id)

static bool s_is_na(const CBioseq &seq)

static bool s_has_accession(const CSeq_id &id)

const CBioseq & GetNucFromNucProtSet(void) const

const CBioseq & GetMasterFromSegSet(void) const

CSeq_entry * GetParentEntry(void) const

const CBioseq & GetGenomicFromGenProdSet(void) const

CConstRef< CBioseq_set > GetParentSet(void) const

bool NeedsDocsumTitle() const

void GetLabel(string *label, ELabelType type) const

CSeq_entry * GetParentEntry(void) const

CConstRef< CBioseq_set > GetParentSet(void) const

CSeq_entry * GetParentEntry(void) const

Template class for iteration on objects of class C (non-medifiable version)

static const char si[8][64]

#define ITERATE(Type, Var, Cont)

ITERATE macro to sequence through container elements.

#define NCBI_THROW(exception_class, err_code, message)

Generic macro to throw an exception, given the exception class, error code and message string.

const string & FindName(TEnumValueType value, bool allowBadValue) const

Find name of the enum by its numeric value.

#define ENUM_METHOD_NAME(EnumName)

string GetSeqIdString(bool with_version=false) const

Return seqid string with optional version for text seqid type.

CConstBeginInfo ConstBegin(const C &obj)

Get starting point of non-modifiable object hierarchy.

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

static string SizetToString(size_t value, TNumToStringFlags flags=0, int base=10)

Convert size_t to string.

static const char label[]

@ e_Other

for historical reasons, 'other' = 'refseq'

@ e_Tpe

Third Party Annot/Seq EMBL.

@ e_Tpd

Third Party Annot/Seq DDBJ.

@ e_Tpg

Third Party Annot/Seq Genbank.

const TSeq & GetSeq(void) const

Get the variant data.

bool IsSetClass(void) const

Check if a value has been assigned to Class data member.

TClass GetClass(void) const

Get the Class member data.

const TSet & GetSet(void) const

Get the variant data.

bool IsSeq(void) const

Check if variant Seq is selected.

bool IsSetSeq_set(void) const

Check if a value has been assigned to Seq_set data member.

bool IsSet(void) const

Check if variant Set is selected.

const TSeq_set & GetSeq_set(void) const

Get the Seq_set member data.

list< CRef< CSeq_entry > > TSeq_set

@ eClass_pop_set

population study

@ eClass_phy_set

phylogenetic study

@ eClass_mut_set

set of mutations

@ eClass_eco_set

ecological sample study

@ eClass_nuc_prot

nuc acid and coded proteins

@ eClass_gen_prod_set

genomic products, chrom+mRNA+protein

@ eClass_segset

segmented sequence + parts

const TInst & GetInst(void) const

Get the Inst member data.

bool IsSetMol(void) const

Check if a value has been assigned to Mol data member.

TLength GetLength(void) const

Get the Length member data.

TMol GetMol(void) const

Get the Mol member data.

@ eMol_na

just a nucleic acid

RetroSearch is an open source project built by @garambo | Open a GitHub Issue

Search and Browse the WWW like it's 1997 | Search results from DuckDuckGo

HTML: 3.2 | Encoding: UTF-8 | Version: 0.7.4