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Showing content from http://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/doxyhtml/Bioseq___8hpp_source.html below:

NCBI C++ ToolKit: include/objects/seq/Bioseq_.hpp Source File

41 #ifndef OBJECTS_SEQ_BIOSEQ_BASE_HPP 42 #define OBJECTS_SEQ_BIOSEQ_BASE_HPP 52 #ifndef BEGIN_objects_SCOPE 53 # define BEGIN_objects_SCOPE BEGIN_SCOPE(objects) 54 # define END_objects_SCOPE END_SCOPE(objects) 94  typedef

list< CRef< CSeq_id > >

TId

;

97  typedef

list< CRef< CSeq_annot > >

TAnnot

;

120  bool

IsSetId(

void

)

const

;

127  bool

CanGetId(

void

)

const

;

130  void

ResetId(

void

);

152  bool

IsSetDescr(

void

)

const

;

159  bool

CanGetDescr(

void

)

const

;

162  void

ResetDescr(

void

);

168  const TDescr

& GetDescr(

void

)

const

;

180  TDescr

& SetDescr(

void

);

190  bool

IsSetInst(

void

)

const

;

197  bool

CanGetInst(

void

)

const

;

200  void

ResetInst(

void

);

206  const TInst

& GetInst(

void

)

const

;

218  TInst

& SetInst(

void

);

227  bool

IsSetAnnot(

void

)

const

;

234  bool

CanGetAnnot(

void

)

const

;

237  void

ResetAnnot(

void

);

243  const TAnnot

& GetAnnot(

void

)

const

;

249  TAnnot

& SetAnnot(

void

);

252  virtual void

Reset(

void

);

326  return m_Inst

.NotEmpty();

*** Sequence ******************************** *

@Seq_descr.hpp User-defined methods of the data storage class.

Base class for all serializable objects.

void ThrowUnassigned(TMemberIndex index) const

const CSeq_id & GetId(const CSeq_loc &loc, CScope *scope)

If all CSeq_ids embedded in CSeq_loc refer to the same CBioseq, returns the first CSeq_id found,...

uint32_t Uint4

4-byte (32-bit) unsigned integer

#define END_NCBI_SCOPE

End previously defined NCBI scope.

#define BEGIN_NCBI_SCOPE

Define ncbi namespace.

list< CRef< CSeq_id > > m_Id

TId & SetId(void)

Assign a value to Id data member.

const TInst & GetInst(void) const

Get the Inst member data.

bool CanGetAnnot(void) const

Check if it is safe to call GetAnnot method.

bool IsSetAnnot(void) const

Check if a value has been assigned to Annot data member.

TAnnot & SetAnnot(void)

Assign a value to Annot data member.

const TAnnot & GetAnnot(void) const

Get the Annot member data.

const TId & GetId(void) const

Get the Id member data.

bool CanGetDescr(void) const

Check if it is safe to call GetDescr method.

bool IsSetInst(void) const

the sequence data Check if a value has been assigned to Inst data member.

list< CRef< CSeq_id > > TId

TInst & SetInst(void)

Assign a value to Inst data member.

bool IsSetDescr(void) const

descriptors Check if a value has been assigned to Descr data member.

CBioseq_Base & operator=(const CBioseq_Base &)

bool CanGetId(void) const

Check if it is safe to call GetId method.

Tparent::CMemberIndex< E_memberIndex, 5 > TmemberIndex

DECLARE_INTERNAL_TYPE_INFO()

list< CRef< CSeq_annot > > m_Annot

bool IsSetId(void) const

equivalent identifiers Check if a value has been assigned to Id data member.

list< CRef< CSeq_annot > > TAnnot

void ResetInst(void)

Reset Inst data member.

CBioseq_Base(const CBioseq_Base &)

const TDescr & GetDescr(void) const

Get the Descr member data.

bool CanGetInst(void) const

Check if it is safe to call GetInst method.

const GenericPointer< typename T::ValueType > T2 value


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